View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14575_low_10 (Length: 360)
Name: NF14575_low_10
Description: NF14575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14575_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 7 - 344
Target Start/End: Original strand, 26599217 - 26599554
Alignment:
| Q |
7 |
caaaggagtggaaaaaagtgcagagaaaaatttgagaatctgtacaaatattacaagaagacaaaagaaggtaaagcaggaaggcatgatggtaagcatt |
106 |
Q |
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| T |
26599217 |
caaaggagtggaaaaaagtgcagagaaaaatttgagaatctgtacaaatattacaagaagacaaaagaaggtaaagcaggaaggcatgatggtaagcatt |
26599316 |
T |
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| Q |
107 |
acaggttttttcgtcaacttgaagctttatatggtgaaaacagtaaccaaacttctctaccagaaaccaattttgtcaacaacaataatttccatttcca |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26599317 |
acaggttttttcgtcaacttgaagctttatatggtgaaaacagtaaccaaacttctctaccagaaaccaattttgtcaacaacaataatttccatttcca |
26599416 |
T |
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| Q |
207 |
acaaacaagtaatagccaaaaccctcacaatgatcatagcctcagtctcactactaactcaactgactttgaaatcgatacgtcgtcgtctgatgatggc |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26599417 |
acaaacaagtaatagccaaaaccctcacaatgatcatagcctcagtctcactactaactcaactgactttgaaatcgatacgtcgtcgtctgatgatgga |
26599516 |
T |
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| Q |
307 |
aatgatgtgaagggaaagaggaagagtagtggaagaag |
344 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
26599517 |
aatgatgtgaagggaaagaggaagagtagtggaagaag |
26599554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 7 - 104
Target Start/End: Complemental strand, 41605391 - 41605294
Alignment:
| Q |
7 |
caaaggagtggaaaaaagtgcagagaaaaatttgagaatctgtacaaatattacaagaagacaaaagaaggtaaagcaggaaggcatgatggtaagca |
104 |
Q |
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||||| |||||||| || |||| |||||| ||||||||| ||||||| |||||||||||||| || ||||||||||| | || || ||||||||||| |
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| T |
41605391 |
caaagaagtggaaagaaatgcaaagaaaagtttgagaatttgtacaagtattacaagaagaccaaggaaggtaaagctagtagacaagatggtaagca |
41605294 |
T |
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