View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14575_low_11 (Length: 348)
Name: NF14575_low_11
Description: NF14575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14575_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 47 - 333
Target Start/End: Complemental strand, 33893608 - 33893322
Alignment:
| Q |
47 |
tagttgtataaatatcatttcttccaaaagtaatgtataccgtttgaaattttgaaatagaatttagagtcggaaaggtcaatgcatattttgacaaata |
146 |
Q |
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| T |
33893608 |
tagttatacaaatattatttcttccaaaagtaatgtataccgtttgaaattttgaaatagaatttagaggcggaaaggtcaatgcatattttgacaaaca |
33893509 |
T |
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| Q |
147 |
cattcataaccatattgacgtgcatgcaaaccataccacggacactttctacataacagtgagcataaaataaaatattttcatcagaaaatattttgaa |
246 |
Q |
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| T |
33893508 |
cattcataaccatattgacgtgcatgcaaaccataccacggacactttctacataacactgagcataaaataaaatattttcatcagaaaatattttgaa |
33893409 |
T |
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| Q |
247 |
attaaacatatattagttagataggtccatgcctataatgagtgacatttgtcctttcatttgtccgttaatcactatgcacgtact |
333 |
Q |
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| T |
33893408 |
attaaacatatattagatagataggtccatgcctataatgagtgacatttgtcctttcatttgtccgttaatcactatgcatgtact |
33893322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 188 - 259
Target Start/End: Original strand, 33850779 - 33850847
Alignment:
| Q |
188 |
acactttctacataacagtgagcataaaataaaatattttcatcagaaaatattttgaaattaaacatatat |
259 |
Q |
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| T |
33850779 |
acactttatacataacagtgagcataaaacaaagt---ttcatcagaaaatattttgaaattaaacatatat |
33850847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 188 - 259
Target Start/End: Original strand, 33755271 - 33755340
Alignment:
| Q |
188 |
acactttctacataacagtgagca-taaaataaaatattttcatcagaaaatattttgaaattaaacatatat |
259 |
Q |
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| T |
33755271 |
acactttatacataacagtgagcaataaaacaaagt---ttcatcagaaaatattttgaaattaaacatatat |
33755340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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