View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14575_low_12 (Length: 346)
Name: NF14575_low_12
Description: NF14575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14575_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 19 - 332
Target Start/End: Original strand, 10256005 - 10256318
Alignment:
| Q |
19 |
ggaggatggtgatgaagaggatgatggttatttagtgagttatgttcatgatgagaagaagggagagtctaagtttttggtgatggatgctaagtcgccg |
118 |
Q |
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| T |
10256005 |
ggaggatggtgaagaagaggatgatggttatttagtgagttatgtgcatgatgagaaaaagggagagtctaagtttttggtgatggatgctaagtcgccg |
10256104 |
T |
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| Q |
119 |
gagtttgagattgtggcggaagtgaagttgccaaggagggtgccttatggttttcatggattgtttgtgaaagagagtgacatcaccaagttgtcggtgt |
218 |
Q |
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| T |
10256105 |
gagtttgagattgtggcggaagtgaagttgccaaggagggtgccttatggttttcatggattgtttgtgaaagagagtgacatcaccaagttgtcggtgt |
10256204 |
T |
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| Q |
219 |
cgtagggatgaagacatagttctcttgtctctgttctaagatacaattattgttgtttatacggtaaacaattacggaaggaattggggttagaaaaatt |
318 |
Q |
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| T |
10256205 |
cgtagggatgaagacatagttcttttgtctctgttctaagatacaattattgttgtttatacggtaaacaattacggaaagaattggggttagaaaaatt |
10256304 |
T |
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| Q |
319 |
gttgatagtataat |
332 |
Q |
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| T |
10256305 |
gttgatactataat |
10256318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 23 - 216
Target Start/End: Complemental strand, 10238599 - 10238406
Alignment:
| Q |
23 |
gatggtgatgaagaggatgatggttatttagtgagttatgttcatgatgagaagaagggagagtctaagtttttggtgatggatgctaagtcgccggagt |
122 |
Q |
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| T |
10238599 |
gatggtgaggaagaggatgatggttatttagtgagttatgtgcatgatgagaagaagggagagtcaaggtttttggtgatggatgctaagtctccggagt |
10238500 |
T |
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| Q |
123 |
ttgagattgtggcggaagtgaagttgccaaggagggtgccttatggttttcatggattgtttgtgaaagagagtgacatcaccaagttgtcggt |
216 |
Q |
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| T |
10238499 |
ttgagattgtggcggaagtgaagttgccaaggagggtgccttatggttttcatggattgtttgtgaaagagagtgacatcacgaggttgtcggt |
10238406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 25 - 226
Target Start/End: Complemental strand, 10229817 - 10229616
Alignment:
| Q |
25 |
tggtgatgaagaggatgatggttatttagtgagttatgttcatgatgagaagaagggagagtctaagtttttggtgatggatgctaagtcgccggagttt |
124 |
Q |
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| T |
10229817 |
tggtgaggaagaggatgatggttatttagtgagttatgtgcatgatgagaagaagggagaatctaagtttttggtgatggatgcgaagtcgccagagttt |
10229718 |
T |
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| Q |
125 |
gagattgtggcggaagtgaagttgccaaggagggtgccttatggttttcatggattgtttgtgaaagagagtgacatcaccaagttgtcggtgtcgtagg |
224 |
Q |
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| T |
10229717 |
gagattgtggcggaggtgaagttgccgaggagggtgccctatggttttcatggattgtttgtgaagcaaagtgacataaccaagttgtcggtgtcgtagg |
10229618 |
T |
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| Q |
225 |
ga |
226 |
Q |
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|| |
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| T |
10229617 |
ga |
10229616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 286
Target Start/End: Complemental strand, 10229570 - 10229534
Alignment:
| Q |
250 |
tgttctaagatacaattattgttgtttatacggtaaa |
286 |
Q |
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| T |
10229570 |
tgttctaagatacaactattgttgtttatacggtaaa |
10229534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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