View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14575_low_13 (Length: 313)
Name: NF14575_low_13
Description: NF14575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14575_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 9 - 280
Target Start/End: Complemental strand, 44475554 - 44475283
Alignment:
| Q |
9 |
caaaggtgataatatagtggtaaccatgaatacaaaatcaaattttctataatactttttataaagattaaataatttacctgatgccaagttaagttgc |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44475554 |
caaaggtgataatatagtggtaaccatgaatacaaaatcaaattttctataatactttttataaagattaaataatttacctgatgccaagttaagttgc |
44475455 |
T |
|
| Q |
109 |
agattaagattcagataatagctttgatggtcttcaaaaaagcccatatacacgatctctgctttactctctttgcactgaatgcatcctgttttttgtt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44475454 |
agattaagattcagataatagctttgatggtcttcaaaaaagcccatatacacgatctctgctttactctctttgcactgaatgcatcctgttttttgtt |
44475355 |
T |
|
| Q |
209 |
cttatttttatgtgttacttttgaatactgtcgaattttctccacaattagaactccattcatatatcccct |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44475354 |
cttatttttatgtgttacttttgaatactgtcgaattttctccacaattagaactccattcatatatcccct |
44475283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 130; Significance: 2e-67; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 58 - 286
Target Start/End: Complemental strand, 38633586 - 38633360
Alignment:
| Q |
58 |
taatactttttataaagattaaataatttacctgatgccaagttaagttgcagattaagattcagataatagctttgatggtcttcaaaaaagcccatat |
157 |
Q |
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| T |
38633586 |
taatactttttttaaagatcaagtaatttacctgttgccaagtt-----gcagattaagattcagatactagctttgatggtcttcaaaaaggcccatat |
38633492 |
T |
|
| Q |
158 |
acacgatctctgctttactctctttgcactgaatgcatcctgttttttgt---tcttatttttatgtgttacttttgaatactgtcgaattttctccaca |
254 |
Q |
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||||||||||| ||||| | |||||||||| ||||||||||||||||||| ||||||| ||||||||||||| ||||||||||| ||||||||||||| |
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| T |
38633491 |
acacgatctcttctttagtttctttgcactaaatgcatcctgttttttgttcttcttattattatgtgttacttctgaatactgtctaattttctccaca |
38633392 |
T |
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| Q |
255 |
attagaactccattcatatatcccctttcgat |
286 |
Q |
| |
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||||||||||| | |||| || |||||||||| |
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| T |
38633391 |
attagaactccttgcatacattccctttcgat |
38633360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 10 - 219
Target Start/End: Complemental strand, 39849361 - 39849154
Alignment:
| Q |
10 |
aaaggtgataatatagtggtaaccatgaatacaaaatcaaattttctataatacttt-----ttataaagattaaataatttacctgatgccaagttaag |
104 |
Q |
| |
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||||||||||||| |||||||||| |||||| | ||||||||||| |||||||||| || |||||| |||||||||||||||||||||||| |
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| T |
39849361 |
aaaggtgataata--gtggtaaccacgaatactatatcaaattttccataatactttaattttttaaaagatcaaataatttacctgatgccaagtt--- |
39849267 |
T |
|
| Q |
105 |
ttgcagattaagattcagataatagctttgatggtcttcaaaaaagcccatatacacgatctctgctttactctctttgcactgaatgcatcctgttttt |
204 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||| |||| |||| || |||| ||||| |||||| ||||||||| |
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| T |
39849266 |
--gcagattaagattcatataatagctttgatggtcttcaaaattgcccatatgcacgaactcttctttgctttcttcgcactaaatgcaccctgttttt |
39849169 |
T |
|
| Q |
205 |
tgttcttatttttat |
219 |
Q |
| |
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|||| ||||| |||| |
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| T |
39849168 |
tgttgttattattat |
39849154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 101
Target Start/End: Original strand, 38453204 - 38453297
Alignment:
| Q |
10 |
aaaggtgataatatagtggtaaccatgaatacaaaatcaaattttctataatacttt----ttataaagattaaataatttacctgatgccaagtt |
101 |
Q |
| |
|
||||||||||||| ||||||||||||||||| | ||||||||||| |||||| ||| || ||| || |||||||||||||||||||||||| |
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| T |
38453204 |
aaaggtgataata--gtggtaaccatgaatactatatcaaattttccataatagttttttgttcaaaaaatcaaataatttacctgatgccaagtt |
38453297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 286
Target Start/End: Original strand, 38453341 - 38453420
Alignment:
| Q |
207 |
ttcttatttttatgtgttacttttgaatactgtcgaattttctccacaattagaactccattcatatatcccctttcgat |
286 |
Q |
| |
|
|||||||| ||||||||||||| |||||| ||| ||||||||||||||| ||||||| | ||||||| || ||||||| |
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| T |
38453341 |
ttcttattattatgtgttacttctgaatatggtctaattttctccacaatcagaactctttgcatatattccatttcgat |
38453420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 295
Target Start/End: Complemental strand, 39849139 - 39849060
Alignment:
| Q |
216 |
ttatgtgttacttttgaatactgtcgaattttctccacaattagaactccattcatatatcccctttcgatgatcaaagg |
295 |
Q |
| |
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||||||||||||| ||||||| ||| |||||||||||||||| |||||| | ||||||| |||||| ||| | |||||| |
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| T |
39849139 |
ttatgtgttacttctgaatacggtctgattttctccacaattaaaactccttgcatatattcccttttgataaccaaagg |
39849060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 102 - 275
Target Start/End: Original strand, 7045435 - 7045607
Alignment:
| Q |
102 |
aagttgcagattaagattcagataatagctttgatggtcttcaaaaaagcccatatacacgatctctgctttactctctttgcactg--aatgcatcctg |
199 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||| |||| | ||||||| ||||||| | ||||| || ||| ||||| ||| ||| || |
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| T |
7045435 |
aagttgcaaattaagattcagataatagctttgatggtcttctaaaatggccatata-acgatcttttcttta--ctttttccactgtaaatttatcttg |
7045531 |
T |
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| Q |
200 |
ttttttgttcttatttttatgtgttacttttgaatactgtcgaattttctccacaattagaactccattcatatat |
275 |
Q |
| |
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||||||||| |||| |||| |||||||| ||||| || | |||||||||||||||||||||||| | ||||||| |
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| T |
7045532 |
ctttttgttcctattattatatgttacttctgaatcctatttaattttctccacaattagaactccttgcatatat |
7045607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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