View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14575_low_14 (Length: 295)
Name: NF14575_low_14
Description: NF14575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14575_low_14 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 12 - 295
Target Start/End: Original strand, 20542973 - 20543253
Alignment:
| Q |
12 |
ataatactaacaattatatacgcatatatatatcatgaaaggatttaatttctgataatttgtagattttaagcatatatatcatgatagggtttaattt |
111 |
Q |
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| T |
20542973 |
ataatactaacaattatatacgcatat--atatcataaaaggatttaatttctgataatttgtagattttaagcatatatatcatgatagggtttaattt |
20543070 |
T |
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| Q |
112 |
atgataattagacgacatgacnnnnnnnttataataaaagtcagtttaatctcattaannnnnnnngcaatatttttactaaattttgaatcaaaccata |
211 |
Q |
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| T |
20543071 |
atgataattagacgacatgacaaagaaattataataaaagtcagtttaatctcattaattttttttgcaatatttttactaaattttgaatcaaa-cata |
20543169 |
T |
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| Q |
212 |
aacagaaagaacaataagaaataatttaataaaattcatcatggattgtggctgcaatctagtcactcccatatgatgaaaccc |
295 |
Q |
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| T |
20543170 |
aacagaaagaacaataagaaataatttaataaaattcatcatggattgtggctgcaatctagttactcccatatgatgaaaccc |
20543253 |
T |
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