View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14575_low_15 (Length: 273)
Name: NF14575_low_15
Description: NF14575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14575_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 45190146 - 45189889
Alignment:
| Q |
1 |
ttgtgggaaaatgttatatgaatcatcaggttcccatgttcttgacaaggtgtcaccatcgggagttatggtggggccaccaacatttattctataagat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
45190146 |
ttgtgggaaaatgttatatgaatcatcaggttcccatgttcttgacaaggtgtcaccatcaggagttatggtggggccaccaacatttattctataagat |
45190047 |
T |
|
| Q |
101 |
acttgcagagctgatttcgtcaccccattgaattctccaagtggtgaaacttgagttgctgaatctgatataagtgtatcaggagctgaaacaatttcaa |
200 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45190046 |
acttgcagagctgatttcgtcaaaccattgaattctccaagtggtgaaacttgagttgctgaatctgatataagtgtatcaggagctgaaacaatttcaa |
45189947 |
T |
|
| Q |
201 |
tggcattgatgaatgcaaaggacnnnnnnnnnggtatgaacttgagagagaatctagt |
258 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
45189946 |
tggcattgatgaatgcaaaggactttttttttggtatgaacttgagagagaatctagt |
45189889 |
T |
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