View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14575_low_18 (Length: 258)

Name: NF14575_low_18
Description: NF14575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14575_low_18
NF14575_low_18
[»] chr6 (13 HSPs)
chr6 (40-209)||(2438800-2438972)
chr6 (40-209)||(3676331-3676505)
chr6 (86-193)||(2537059-2537169)
chr6 (86-172)||(16316657-16316743)
chr6 (86-158)||(10927869-10927941)
chr6 (86-157)||(27901260-27901331)
chr6 (89-163)||(32249936-32250010)
chr6 (49-119)||(17590000-17590070)
chr6 (86-136)||(23915527-23915577)
chr6 (150-209)||(3676767-3676831)
chr6 (77-119)||(17589948-17589990)
chr6 (42-87)||(10927743-10927788)
chr6 (40-81)||(35219457-35219498)
[»] chr3 (21 HSPs)
chr3 (40-145)||(22176437-22176542)
chr3 (40-145)||(22101492-22101597)
chr3 (86-193)||(44822221-44822331)
chr3 (86-209)||(22101929-22102057)
chr3 (88-163)||(53359493-53359568)
chr3 (86-151)||(35863689-35863754)
chr3 (86-193)||(28096290-28096400)
chr3 (86-158)||(35369078-35369150)
chr3 (86-163)||(22176876-22176953)
chr3 (90-163)||(22833299-22833372)
chr3 (86-163)||(7115968-7116045)
chr3 (90-148)||(7116577-7116635)
chr3 (91-157)||(34492078-34492144)
chr3 (90-158)||(3422631-3422699)
chr3 (40-80)||(3422811-3422851)
chr3 (40-79)||(22101801-22101840)
chr3 (49-86)||(42897030-42897067)
chr3 (40-80)||(3424693-3424733)
chr3 (40-80)||(35368936-35368976)
chr3 (40-76)||(44822079-44822115)
chr3 (40-76)||(51139766-51139802)
[»] chr5 (12 HSPs)
chr5 (40-193)||(28221965-28222120)
chr5 (86-193)||(28263786-28263896)
chr5 (43-156)||(3160861-3160973)
chr5 (86-158)||(1190401-1190473)
chr5 (111-156)||(3160809-3160854)
chr5 (40-81)||(38938772-38938813)
chr5 (40-87)||(28766093-28766140)
chr5 (33-87)||(7464327-7464381)
chr5 (33-87)||(39850686-39850740)
chr5 (111-156)||(3160756-3160801)
chr5 (47-80)||(38939034-38939067)
chr5 (40-80)||(1190255-1190295)
[»] chr4 (21 HSPs)
chr4 (72-193)||(11974680-11974804)
chr4 (86-193)||(44814511-44814621)
chr4 (90-193)||(3729490-3729596)
chr4 (40-119)||(11974809-11974888)
chr4 (86-158)||(54198299-54198370)
chr4 (90-161)||(38001454-38001525)
chr4 (88-193)||(9162593-9162701)
chr4 (87-158)||(44673273-44673344)
chr4 (89-193)||(5525027-5525132)
chr4 (85-163)||(12216960-12217038)
chr4 (49-108)||(33728869-33728928)
chr4 (49-87)||(2291288-2291326)
chr4 (41-87)||(9162916-9162962)
chr4 (40-81)||(49358018-49358059)
chr4 (43-80)||(54198471-54198508)
chr4 (91-193)||(10726370-10726475)
chr4 (91-193)||(10940139-10940244)
chr4 (40-87)||(44814376-44814423)
chr4 (40-81)||(11064724-11064765)
chr4 (217-246)||(44673180-44673209)
chr4 (40-76)||(5524881-5524917)
[»] chr7 (15 HSPs)
chr7 (40-158)||(9329647-9329764)
chr7 (86-158)||(11321279-11321351)
chr7 (86-157)||(41755438-41755509)
chr7 (86-193)||(35492178-35492287)
chr7 (86-163)||(47221000-47221077)
chr7 (90-193)||(20621218-20621324)
chr7 (86-163)||(9307724-9307799)
chr7 (93-156)||(9302210-9302273)
chr7 (93-156)||(9306648-9306711)
chr7 (43-80)||(45022631-45022668)
chr7 (130-163)||(9303286-9303319)
chr7 (40-80)||(9302059-9302099)
chr7 (40-80)||(9306497-9306537)
chr7 (40-80)||(11321451-11321491)
chr7 (40-76)||(47220854-47220890)
[»] chr1 (16 HSPs)
chr1 (90-193)||(14494798-14494902)
chr1 (86-193)||(237176-237284)
chr1 (86-155)||(29699187-29699256)
chr1 (86-158)||(50231531-50231603)
chr1 (86-154)||(8528219-8528287)
chr1 (86-187)||(9041223-9041327)
chr1 (99-163)||(20133038-20133102)
chr1 (105-157)||(43575210-43575262)
chr1 (93-163)||(14245889-14245959)
chr1 (40-87)||(24162672-24162719)
chr1 (40-87)||(43577183-43577230)
chr1 (40-87)||(50231398-50231445)
chr1 (86-152)||(49265943-49266009)
chr1 (86-119)||(9046387-9046420)
chr1 (43-87)||(14245797-14245841)
chr1 (40-76)||(14494661-14494697)
[»] chr2 (16 HSPs)
chr2 (41-198)||(44972992-44973148)
chr2 (90-163)||(35193434-35193507)
chr2 (90-246)||(7061867-7062028)
chr2 (86-163)||(309848-309925)
chr2 (90-245)||(43528444-43528603)
chr2 (86-246)||(44539436-44539602)
chr2 (86-163)||(13594515-13594592)
chr2 (40-87)||(19901609-19901656)
chr2 (86-137)||(25047962-25048013)
chr2 (40-76)||(44539702-44539738)
chr2 (40-87)||(7061734-7061781)
chr2 (40-87)||(21956532-21956579)
chr2 (33-87)||(8063236-8063290)
chr2 (105-147)||(27339513-27339555)
chr2 (34-76)||(43528298-43528340)
chr2 (40-76)||(2221938-2221974)
[»] scaffold0066 (2 HSPs)
scaffold0066 (88-193)||(56467-56575)
scaffold0066 (40-81)||(56333-56374)
[»] chr8 (5 HSPs)
chr8 (86-155)||(24432233-24432302)
chr8 (90-163)||(5592692-5592765)
chr8 (41-87)||(32889059-32889105)
chr8 (33-76)||(26528069-26528112)
chr8 (40-80)||(32889177-32889217)
[»] scaffold0025 (1 HSPs)
scaffold0025 (86-163)||(3490-3567)
[»] scaffold0123 (1 HSPs)
scaffold0123 (89-209)||(17180-17305)
[»] scaffold0086 (1 HSPs)
scaffold0086 (33-87)||(48321-48376)


Alignment Details
Target: chr6 (Bit Score: 130; Significance: 2e-67; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 40 - 209
Target Start/End: Complemental strand, 2438972 - 2438800
Alignment:
Q  40 gggttgaacttttctttcaaaaaatacccttaattttaaatataaatagccaattataaaataacacgtggattagtaattcatgtcactaatcgtcccc 139  Q
    |||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2438972 gggttgaacttttctttccaaaaatacccttaattttaaatacaaatagtcaattataaaataacacgtggattagtaattcatgtcactaatcgtcccc 2438873  T
Q  140 gttaaccctcttttacctctgttatccaaagat-actcacaaaaaactaacac--aacaaaatttcatgttac 209  Q
    ||||||||||||||||||||||||||||||||| |  | ||||||||||||||  ||||||||||||||||||    
T  2438872 gttaaccctcttttacctctgttatccaaagatcaaactcaaaaaactaacacaaaacaaaatttcatgttac 2438800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 40 - 209
Target Start/End: Original strand, 3676331 - 3676505
Alignment:
Q  40 gggttgaacttttctttcaaaaaatacccttaattttaaatataaatagccaattataaaataacacgtggattagtaattcatgtcactaatcgtcccc 139  Q
    |||||| ||||||||| | ||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||| ||| ||||||||||||||     
T  3676331 gggttggacttttcttcccaaaaatacccttaattttaaatacaaatagtcaattatacaataacacgtggattagtaatccatatcactaatcgtccct 3676430  T
Q  140 gttaaccctcttttacctctgttatccaaagat---actcacaaaaaacta--acacaacaaaatttcatgttac 209  Q
    |||||||||||||||||||||||||||||||||   |||||||||||||||  ||| ||||||||||||||||||    
T  3676431 gttaaccctcttttacctctgttatccaaagatcaaactcacaaaaaactatcacaaaacaaaatttcatgttac 3676505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 86 - 193
Target Start/End: Original strand, 2537059 - 2537169
Alignment:
Q  86 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat---actcacaaaa 182  Q
    ||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||| ||||||||| |||| ||| ||||   ||||||||||    
T  2537059 tagccaattataaaataacacgtgggttactaatccatgtcactaatcgtccccgttaaccctattttacctccgttaaccacagatcaaactcacaaaa 2537158  T
Q  183 aactaacacaa 193  Q
    ||||| |||||    
T  2537159 aactagcacaa 2537169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 86 - 172
Target Start/End: Complemental strand, 16316743 - 16316657
Alignment:
Q  86 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat 172  Q
    |||| |||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||| ||||| ||| ||||    
T  16316743 tagctaattataaaataacacgtggattactaatccatgtcactaatcgtctccgttaaccctcttttacctatgttaaccatagat 16316657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 86 - 158
Target Start/End: Original strand, 10927869 - 10927941
Alignment:
Q  86 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctc 158  Q
    ||||||||||||||||||||||||||||| |||| ||||||| ||||||||| ||||||||||||||||||||    
T  10927869 tagccaattataaaataacacgtggattactaatccatgtcaataatcgtcctcgttaaccctcttttacctc 10927941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 86 - 157
Target Start/End: Complemental strand, 27901331 - 27901260
Alignment:
Q  86 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacct 157  Q
    ||||||||||||||||||||| ||||||| |||| ||||| ||| |||||||||||||||||||||||||||    
T  27901331 tagccaattataaaataacacatggattactaatccatgttactgatcgtccccgttaaccctcttttacct 27901260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 89 - 163
Target Start/End: Complemental strand, 32250010 - 32249936
Alignment:
Q  89 ccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgtta 163  Q
    |||||||||||||||||||| ||||| |||| |||||||||||||||| | ||||||| ||||||||||||||||    
T  32250010 ccaattataaaataacacgtagattactaatccatgtcactaatcgtctctgttaaccatcttttacctctgtta 32249936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 119
Target Start/End: Complemental strand, 17590070 - 17590000
Alignment:
Q  49 ttttctttcaaaaaatacccttaattttaaatataaatagccaattataaaataacacgtggattagtaat 119  Q
    ||||||||| ||||||||| |||||||||| || ||||| |  |||| |||||||||||||||||||||||    
T  17590070 ttttctttccaaaaataccattaattttaattacaaataactcattacaaaataacacgtggattagtaat 17590000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 86 - 136
Target Start/End: Complemental strand, 23915577 - 23915527
Alignment:
Q  86 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtc 136  Q
    ||||||||||||||||||||||||||||| ||||  |||||||||||||||    
T  23915577 tagccaattataaaataacacgtggattactaatctatgtcactaatcgtc 23915527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 209
Target Start/End: Original strand, 3676767 - 3676831
Alignment:
Q  150 ttttacctctgttatccaaagat---actcacaaaaaacta--acacaacaaaatttcatgttac 209  Q
    |||||||||||||||||||||||   |||||||||||||||  ||| ||||||||||||||||||    
T  3676767 ttttacctctgttatccaaagatcaaactcacaaaaaactatcacaaaacaaaatttcatgttac 3676831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 77 - 119
Target Start/End: Complemental strand, 17589990 - 17589948
Alignment:
Q  77 aaatataaatagccaattataaaataacacgtggattagtaat 119  Q
    ||||| ||||||||||||||||| |||||||||||||||||||    
T  17589990 aaatacaaatagccaattataaattaacacgtggattagtaat 17589948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 10927743 - 10927788
Alignment:
Q  42 gttgaacttttctttcaaaaaatacccttaattttaaatataaata 87  Q
    |||||| ||||||||| |||||||| ||||||||||||||||||||    
T  10927743 gttgaaattttctttccaaaaatactcttaattttaaatataaata 10927788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 35219498 - 35219457
Alignment:
Q  40 gggttgaacttttctttcaaaaaatacccttaattttaaata 81  Q
    |||||| ||||||||||| |||||||||||||||||||||||    
T  35219498 gggttggacttttctttccaaaaatacccttaattttaaata 35219457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 40 - 145
Target Start/End: Original strand, 22176437 - 22176542
Alignment:
Q  40 gggttgaacttttctttcaaaaaatacccttaattttaaatataaatagccaattataaaataacacgtggattagtaattcatgtcactaatcgtcccc 139  Q
    |||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |    
T  22176437 gggttgaacttttcttttcaaaaatacccttaattttaaatacaaatagccaattataaaataacacgtggattagtaatccatgtcactaatcgtccac 22176536  T
Q  140 gttaac 145  Q
    ||||||    
T  22176537 gttaac 22176542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 40 - 145
Target Start/End: Original strand, 22101492 - 22101597
Alignment:
Q  40 gggttgaacttttctttcaaaaaatacccttaattttaaatataaatagccaattataaaataacacgtggattagtaattcatgtcactaatcgtcccc 139  Q
    |||||||||||||||||  ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||  |    
T  22101492 gggttgaacttttcttttcaaaaatacctttaattttaaatacaaatagccaattataaaataacacgtggattagtaatccatgtcactaatcgtcaac 22101591  T
Q  140 gttaac 145  Q
    ||||||    
T  22101592 gttaac 22101597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 86 - 193
Target Start/End: Original strand, 44822221 - 44822331
Alignment:
Q  86 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat---actcacaaaa 182  Q
    ||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||   ||| ||||||    
T  44822221 tagccaattataaaacaacacatggattactaattcatgtcactaatcgtccccgttaaccctcttttacatctgttaaccaaagatcaaacttacaaaa 44822320  T
Q  183 aactaacacaa 193  Q
    ||||| |||||    
T  44822321 aactagcacaa 44822331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 86 - 209
Target Start/End: Original strand, 22101929 - 22102057
Alignment:
Q  86 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat---actcacaaaa 182  Q
    ||||| ||||||||||||||| ||||||| |||| ||||||||||||||||||| |||||||||||||||||| |||| ||| | ||   ||||||||||    
T  22101929 tagcctattataaaataacacatggattactaatccatgtcactaatcgtccccattaaccctcttttacctccgttaaccacaaatcaaactcacaaaa 22102028  T
Q  183 aactaacac--aacaaaatttcatgttac 209  Q
    ||||| |||  |||||||  |||||||||    
T  22102029 aactagcactaaacaaaaagtcatgttac 22102057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 88 - 163
Target Start/End: Original strand, 53359493 - 53359568
Alignment:
Q  88 gccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgtta 163  Q
    ||||||||||||||| |||||| |||| |||||||||||||||||| |||||||||||||||||||||||| ||||    
T  53359493 gccaattataaaatagcacgtgaattattaattcatgtcactaatcatccccgttaaccctcttttacctccgtta 53359568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 86 - 151
Target Start/End: Complemental strand, 35863754 - 35863689
Alignment:
Q  86 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctctt 151  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||    
T  35863754 tagccaattataaaataacacgtggattactaatccatgtcactaatcgtccccgttaaccatctt 35863689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 86 - 193
Target Start/End: Original strand, 28096290 - 28096400
Alignment:
Q  86 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat---actcacaaaa 182  Q
    |||||||||||||||||||| || ||||| |||| ||||||||||||||||| ||||||||||||||| |||| ||||  || ||||   ||||||||||    
T  28096290 tagccaattataaaataacatgttgattactaatccatgtcactaatcgtcctcgttaaccctcttttccctccgttaatcacagatcaaactcacaaaa 28096389  T
Q  183 aactaacacaa 193  Q
    ||||| |||||    
T  28096390 aactagcacaa 28096400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 86 - 158
Target Start/End: Original strand, 35369078 - 35369150
Alignment:
Q  86 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctc 158  Q
    ||||||||||||||||||||| ||||||| |||| ||||||||||||||||||| |||||| |||||||||||    
T  35369078 tagccaattataaaataacacatggattactaatccatgtcactaatcgtccccattaaccatcttttacctc 35369150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 86 - 163
Target Start/End: Original strand, 22176876 - 22176953
Alignment:
Q  86 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgtta 163  Q
    ||||| ||||||||||||||| ||||||| |||| ||||||||||||||||||| |||||||| ||||||||| ||||    
T  22176876 tagcctattataaaataacacatggattactaatccatgtcactaatcgtccccattaacccttttttacctccgtta 22176953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 90 - 163
Target Start/End: Original strand, 22833299 - 22833372
Alignment:
Q  90 caattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgtta 163  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||| | |||| |||| |||||||||||||||    
T  22833299 caattataaaataacacgtggattactaatccatgtcactaatcgttctcgttgacccacttttacctctgtta 22833372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 86 - 163
Target Start/End: Complemental strand, 7116045 - 7115968
Alignment:
Q  86 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgtta 163  Q
    |||| ||||||||||||||||||| |||| || | ||||| |||||| ||||||||||| ||||||||||||| ||||    
T  7116045 tagcaaattataaaataacacgtgtattactagtccatgttactaattgtccccgttaatcctcttttacctccgtta 7115968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 90 - 148
Target Start/End: Complemental strand, 7116635 - 7116577
Alignment:
Q  90 caattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccct 148  Q
    |||||||||||||||||||| |||| | ||||||||||||||| ||||| |||||||||    
T  7116635 caattataaaataacacgtgaattaatgattcatgtcactaattgtcccggttaaccct 7116577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 91 - 157
Target Start/End: Original strand, 34492078 - 34492144
Alignment:
Q  91 aattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacct 157  Q
    ||||||||||||||||||| |||| |||| |||||||||||| ||  |||||||| |||||||||||    
T  34492078 aattataaaataacacgtgaattactaatccatgtcactaatagtttccgttaactctcttttacct 34492144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 90 - 158
Target Start/End: Complemental strand, 3422699 - 3422631
Alignment:
Q  90 caattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctc 158  Q
    |||||||||| ||||| |||||||| |||| ||||||  ||||||| ||||||| ||||||||||||||    
T  3422699 caattataaagtaacatgtggattattaatccatgtctttaatcgtacccgttatccctcttttacctc 3422631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 3422851 - 3422811
Alignment:
Q  40 gggttgaacttttctttcaaaaaatacccttaattttaaat 80  Q
    |||||| ||||||||||| ||||||||||||||||||||||    
T  3422851 gggttggacttttctttccaaaaatacccttaattttaaat 3422811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 79
Target Start/End: Original strand, 22101801 - 22101840
Alignment:
Q  40 gggttgaacttttctttcaaaaaatacccttaattttaaa 79  Q
    |||||||||||||||||  |||||||||||||||||||||    
T  22101801 gggttgaacttttcttttcaaaaatacccttaattttaaa 22101840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 42897067 - 42897030
Alignment:
Q  49 ttttctttcaaaaaatacccttaattttaaatataaat 86  Q
    ||||||||| ||||||||||||||||||||||| ||||    
T  42897067 ttttctttccaaaaatacccttaattttaaatacaaat 42897030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 3424733 - 3424693
Alignment:
Q  40 gggttgaacttttctttcaaaaaatacccttaattttaaat 80  Q
    |||||| |||||| |||| ||||||||||||||||||||||    
T  3424733 gggttggacttttatttccaaaaatacccttaattttaaat 3424693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 35368936 - 35368976
Alignment:
Q  40 gggttgaacttttctttcaaaaaatacccttaattttaaat 80  Q
    |||||| ||||||||||| |||||||||||| |||||||||    
T  35368936 gggttggacttttctttccaaaaatacccttgattttaaat 35368976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 76
Target Start/End: Original strand, 44822079 - 44822115
Alignment:
Q  40 gggttgaacttttctttcaaaaaatacccttaatttt 76  Q
    ||||||||| |||||||| ||||||||||||||||||    
T  44822079 gggttgaacatttctttccaaaaatacccttaatttt 44822115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 76
Target Start/End: Complemental strand, 51139802 - 51139766
Alignment:
Q  40 gggttgaacttttctttcaaaaaatacccttaatttt 76  Q
    |||||||||||||||||  ||||||||||||||||||    
T  51139802 gggttgaacttttcttttcaaaaatacccttaatttt 51139766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 40 - 193
Target Start/End: Original strand, 28221965 - 28222120
Alignment:
Q  40 gggttgaacttttctttcaaaaaatacccttaattttaaatataaatagccaattataaaataacacgtggattagtaattcatgtcactaatcgtcccc 139  Q
    |||||| ||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||| |||||||||||  ||  |     
T  28221965 gggttggacttttctttccaaaaatacccttaattttaaatacaaatagtcaattataaaataacatgtggattagtaatccatgtcactaactgt-act 28222063  T
Q  140 gttaaccctcttttacctctgttatccaaagat---actcacaaaaaactaacacaa 193  Q
    ||||||||||||||||||  |||| ||||||||   ||||||||||||||| |||||    
T  28222064 gttaaccctcttttaccttcgttaaccaaagatcaaactcacaaaaaactagcacaa 28222120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 86 - 193
Target Start/End: Complemental strand, 28263896 - 28263786
Alignment:
Q  86 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat---actcacaaaa 182  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||| | ||   ||||||||||    
T  28263896 tagccaattataaaataacacgtggattactaattcatgtcactaatcgtccccgttaactctcttttacctctgttaaccacatatcaaactcacaaaa 28263797  T
Q  183 aactaacacaa 193  Q
    ||||| |||||    
T  28263796 aactagcacaa 28263786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 43 - 156
Target Start/End: Complemental strand, 3160973 - 3160861
Alignment:
Q  43 ttgaacttttctttcaaaaaatacccttaattttaaatataaatagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgtt 142  Q
    ||||||||||||||| |||| ||||||||||||| |||| || ||  |||||||||||||||| ||| ||||||||| ||| |||||||||  | |||||    
T  3160973 ttgaacttttctttccaaaa-tacccttaattttgaatacaattaatcaattataaaataacatgtgaattagtaatccatatcactaatcagctccgtt 3160875  T
Q  143 aaccctcttttacc 156  Q
    ||||||||||||||    
T  3160874 aaccctcttttacc 3160861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 86 - 158
Target Start/End: Original strand, 1190401 - 1190473
Alignment:
Q  86 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctc 158  Q
    ||||||||||||||||||||| || |||| |||| |||||||  |||||||||||||||||||||||||||||    
T  1190401 tagccaattataaaataacacatgaattactaatccatgtcaacaatcgtccccgttaaccctcttttacctc 1190473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 156
Target Start/End: Complemental strand, 3160854 - 3160809
Alignment:
Q  111 attagtaattcatgtcactaatcgtccccgttaaccctcttttacc 156  Q
    |||| |||||||||||||||||| || |||||||||||||||||||    
T  3160854 attaataattcatgtcactaatcatctccgttaaccctcttttacc 3160809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 38938813 - 38938772
Alignment:
Q  40 gggttgaacttttctttcaaaaaatacccttaattttaaata 81  Q
    |||||| ||||||||||| |||||||||||||||||||||||    
T  38938813 gggttggacttttctttccaaaaatacccttaattttaaata 38938772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 87
Target Start/End: Original strand, 28766093 - 28766140
Alignment:
Q  40 gggttgaacttttctttcaaaaaatacccttaattttaaatataaata 87  Q
    |||||||| ||||||||| |||||||||||||||||| |||| |||||    
T  28766093 gggttgaatttttctttccaaaaatacccttaatttttaatacaaata 28766140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 87
Target Start/End: Complemental strand, 7464381 - 7464327
Alignment:
Q  33 cattttcgggttgaacttttctttcaaaaaatacccttaattttaaatataaata 87  Q
    |||||| |||||||||||||||||| ||||||||| | |||||| |||| |||||    
T  7464381 catttttgggttgaacttttctttccaaaaataccttcaattttcaatacaaata 7464327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 87
Target Start/End: Original strand, 39850686 - 39850740
Alignment:
Q  33 cattttcgggttgaacttttctttcaaaaaatacccttaattttaaatataaata 87  Q
    |||||| |||||| |||||||||||||||||||| || |||||| |||| |||||    
T  39850686 catttttgggttggacttttctttcaaaaaatactctcaattttcaatagaaata 39850740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 156
Target Start/End: Complemental strand, 3160801 - 3160756
Alignment:
Q  111 attagtaattcatgtcactaatcgtccccgttaaccctcttttacc 156  Q
    ||||||||| ||||||||||||| || | |||||||||||||||||    
T  3160801 attagtaatccatgtcactaatcatctctgttaaccctcttttacc 3160756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 80
Target Start/End: Complemental strand, 38939067 - 38939034
Alignment:
Q  47 acttttctttcaaaaaatacccttaattttaaat 80  Q
    ||||||||||| ||||||||||||||||||||||    
T  38939067 acttttctttccaaaaatacccttaattttaaat 38939034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 1190255 - 1190295
Alignment:
Q  40 gggttgaacttttctttcaaaaaatacccttaattttaaat 80  Q
    |||||| | ||||||||| ||||||||||||||||||||||    
T  1190255 gggttggaattttctttccaaaaatacccttaattttaaat 1190295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 72 - 193
Target Start/End: Complemental strand, 11974804 - 11974680
Alignment:
Q  72 attttaaatataaatagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaaga 171  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||| |||||||||||| |||| |||||||    
T  11974804 attttaaatacaaatagccaattataaaataacacatggattagtaattcatgccactaatcgtctccgttaactctcttttacctccgttaaccaaaga 11974705  T
Q  172 t---actcacaaaaaactaacacaa 193  Q
    |   ||||||||||||||| |||||    
T  11974704 tcaaactcacaaaaaactagcacaa 11974680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 86 - 193
Target Start/End: Original strand, 44814511 - 44814621
Alignment:
Q  86 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat---actcacaaaa 182  Q
    ||||||||||||||||||||||| ||||| ||||  ||||||||||| ||||||||||||||||||||||||| |||| ||| ||||   ||||||||||    
T  44814511 tagccaattataaaataacacgtagattactaatctatgtcactaattgtccccgttaaccctcttttacctccgttaaccatagatcaaactcacaaaa 44814610  T
Q  183 aactaacacaa 193  Q
    ||||| |||||    
T  44814611 aactagcacaa 44814621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 90 - 193
Target Start/End: Original strand, 3729490 - 3729596
Alignment:
Q  90 caattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat---actcacaaaaaact 186  Q
    |||||||||||||||| |||||||| |||| |||||||||||||||||  ||||||||||||||||||| |||| ||| ||||   ||||||||||||||    
T  3729490 caattataaaataacatgtggattactaatacatgtcactaatcgtccatgttaaccctcttttacctccgttaaccatagatcaaactcacaaaaaact 3729589  T
Q  187 aacacaa 193  Q
    | |||||    
T  3729590 agcacaa 3729596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 40 - 119
Target Start/End: Complemental strand, 11974888 - 11974809
Alignment:
Q  40 gggttgaacttttctttcaaaaaatacccttaattttaaatataaatagccaattataaaataacacgtggattagtaat 119  Q
    |||||||||||||||||   ||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||    
T  11974888 gggttgaacttttcttttccaaaatacccttaattttaattacaaatagccaattacaaaataacacgtggattagtaat 11974809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 86 - 158
Target Start/End: Complemental strand, 54198370 - 54198299
Alignment:
Q  86 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctc 158  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||| | ||||||||||||||||||||||    
T  54198370 tagccaattataaaataacacgtggattactaatccatgtcactaatcat-cccgttaaccctcttttacctc 54198299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 90 - 161
Target Start/End: Original strand, 38001454 - 38001525
Alignment:
Q  90 caattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgt 161  Q
    ||||||||||||||||| ||||||| |||| ||||||||||||| |||||||||||||| ||||||||||||    
T  38001454 caattataaaataacacatggattactaatccatgtcactaatcatccccgttaaccctattttacctctgt 38001525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 88 - 193
Target Start/End: Complemental strand, 9162701 - 9162593
Alignment:
Q  88 gccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat---actcacaaaaaa 184  Q
    ||||||||||||||||||||||||||| |||| ||||||| ||||| ||| ||||||||||||||||| || |||| ||| | ||   ||||||||||||    
T  9162701 gccaattataaaataacacgtggattaataatccatgtcattaatcttccacgttaaccctcttttacatccgttaaccacaaatcaaactcacaaaaaa 9162602  T
Q  185 ctaacacaa 193  Q
    ||| |||||    
T  9162601 ctagcacaa 9162593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 87 - 158
Target Start/End: Complemental strand, 44673344 - 44673273
Alignment:
Q  87 agccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctc 158  Q
    |||||||||||| |||||||||| |||| ||||||| ||||||||| || ||||||||||||||||||||||    
T  44673344 agccaattataagataacacgtgaattactaattcacgtcactaattgttcccgttaaccctcttttacctc 44673273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 89 - 193
Target Start/End: Original strand, 5525027 - 5525132
Alignment:
Q  89 ccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat---actcacaaaaaac 185  Q
    ||||||||||||||||| || ||||| |||| |||||||||  |||||||||||||| |||||||||||| |||| ||| | ||   |||||||||||||    
T  5525027 ccaattataaaataacaagtagattactaatccatgtcact--tcgtccccgttaactctcttttacctccgttaaccacaaatcaaactcacaaaaaac 5525124  T
Q  186 taacacaa 193  Q
    || |||||    
T  5525125 tagcacaa 5525132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 85 - 163
Target Start/End: Original strand, 12216960 - 12217038
Alignment:
Q  85 atagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgtta 163  Q
    ||||||||||||||||||||| |||||||| |||| ||||||| |||| || |  |||||||||||||||||| |||||    
T  12216960 atagccaattataaaataacatgtggattactaatccatgtcagtaattgttcttgttaaccctcttttacctatgtta 12217038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 33728869 - 33728928
Alignment:
Q  49 ttttctttcaaaaaatacccttaattttaaatataaatagccaattataaaataacacgt 108  Q
    ||||||||  ||||||| ||||||||||||||| |||||| |||||||||||||||||||    
T  33728869 ttttcttttcaaaaatatccttaattttaaatacaaatagtcaattataaaataacacgt 33728928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 49 - 87
Target Start/End: Complemental strand, 2291326 - 2291288
Alignment:
Q  49 ttttctttcaaaaaatacccttaattttaaatataaata 87  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  2291326 ttttctttcaaaaaatacccttaattttcaatataaata 2291288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 9162962 - 9162916
Alignment:
Q  41 ggttgaacttttctttcaaaaaatacccttaattttaaatataaata 87  Q
    ||||| ||||||||||| ||||||||||||||||||||||| |||||    
T  9162962 ggttggacttttctttccaaaaatacccttaattttaaatacaaata 9162916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 49358018 - 49358059
Alignment:
Q  40 gggttgaacttttctttcaaaaaatacccttaattttaaata 81  Q
    |||||| ||||||||||| |||||||||||||||||||||||    
T  49358018 gggttggacttttctttccaaaaatacccttaattttaaata 49358059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 54198508 - 54198471
Alignment:
Q  43 ttgaacttttctttcaaaaaatacccttaattttaaat 80  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  54198508 ttgaacttttctttccaaaaatacccttaattttaaat 54198471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 91 - 193
Target Start/End: Original strand, 10726370 - 10726475
Alignment:
Q  91 aattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat---actcacaaaaaacta 187  Q
    ||||||| ||||||| |||||||| ||||  ||||||  |||||||||| ||||||||||||| | | ||||| ||| | ||   |||||||||||||||    
T  10726370 aattatagaataacatgtggattactaatctatgtcataaatcgtccccattaaccctcttttgcttttgttaaccacatatcaaactcacaaaaaacta 10726469  T
Q  188 acacaa 193  Q
     |||||    
T  10726470 gcacaa 10726475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 91 - 193
Target Start/End: Original strand, 10940139 - 10940244
Alignment:
Q  91 aattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat---actcacaaaaaacta 187  Q
    ||||||| ||||||| |||||||| ||||  ||||||  |||||||||| ||||||||||||| | | ||||| ||| | ||   |||||||||||||||    
T  10940139 aattatagaataacatgtggattactaatctatgtcataaatcgtccccattaaccctcttttgcttttgttaaccacatatcaaactcacaaaaaacta 10940238  T
Q  188 acacaa 193  Q
     |||||    
T  10940239 gcacaa 10940244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 87
Target Start/End: Original strand, 44814376 - 44814423
Alignment:
Q  40 gggttgaacttttctttcaaaaaatacccttaattttaaatataaata 87  Q
    |||| ||||||||||||| |||||||||||||||||||| | ||||||    
T  44814376 gggtagaacttttctttccaaaaatacccttaattttaattttaaata 44814423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 11064765 - 11064724
Alignment:
Q  40 gggttgaacttttctttcaaaaaatacccttaattttaaata 81  Q
    |||||| ||||||||||| |||||||||||||||||| ||||    
T  11064765 gggttggacttttctttccaaaaatacccttaattttcaata 11064724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 217 - 246
Target Start/End: Complemental strand, 44673209 - 44673180
Alignment:
Q  217 caaccgcttttatgttgtacatctgtgttg 246  Q
    ||||||||||||||||||||||||||||||    
T  44673209 caaccgcttttatgttgtacatctgtgttg 44673180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 76
Target Start/End: Original strand, 5524881 - 5524917
Alignment:
Q  40 gggttgaacttttctttcaaaaaatacccttaatttt 76  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  5524881 gggttgtacttttctttccaaaaatacccttaatttt 5524917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 40 - 158
Target Start/End: Original strand, 9329647 - 9329764
Alignment:
Q  40 gggttgaacttttctttcaaaaaatacccttaattttaaatataaatagccaattataaaataacacgtggattagtaattcatgtcactaatcgtcccc 139  Q
    |||||| | ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||| ||||| || |     
T  9329647 gggttggatttttctttcaaaa-atacccttaattttaaatataaatagacaattataaaataacatgtggattagtaatccatgtcattaatcatctct 9329745  T
Q  140 gttaaccctcttttacctc 158  Q
    ||||  |||||||||||||    
T  9329746 gttagacctcttttacctc 9329764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 86 - 158
Target Start/End: Complemental strand, 11321351 - 11321279
Alignment:
Q  86 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctc 158  Q
    ||||||||||||||||||||| || |||| |||||||||||||||||||||||| ||||||||||||||||||    
T  11321351 tagccaattataaaataacacatgaattactaattcatgtcactaatcgtccccattaaccctcttttacctc 11321279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 86 - 157
Target Start/End: Complemental strand, 41755509 - 41755438
Alignment:
Q  86 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacct 157  Q
    ||||||||| |||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  41755509 tagccaattgtaaaataacatgtggattactaattcatgtcaccaatcgtccccgttaaccctcttttacct 41755438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 86 - 193
Target Start/End: Original strand, 35492178 - 35492287
Alignment:
Q  86 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat---actcacaaaa 182  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||| ||| |||||||||| ||||||||| |||| ||| ||||    |||||||||    
T  35492178 tagccaattataaaataacatgtggattactaattcatgtcactaatcatcctcgttaaccct-ttttacctccgttaaccatagatcaagctcacaaaa 35492276  T
Q  183 aactaacacaa 193  Q
    ||||| |||||    
T  35492277 aactagcacaa 35492287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 86 - 163
Target Start/End: Original strand, 47221000 - 47221077
Alignment:
Q  86 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgtta 163  Q
    |||||| ||||||||||||||||| |||| ||||||||||||||||| ||||| | ||||||||||||||||| ||||    
T  47221000 tagccagttataaaataacacgtgaattactaattcatgtcactaattgtcccagctaaccctcttttacctccgtta 47221077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 90 - 193
Target Start/End: Complemental strand, 20621324 - 20621218
Alignment:
Q  90 caattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat---actcacaaaaaact 186  Q
    |||||||||||||||| || ||||| |||| |||||||||||||||||||||||||  ||||||||||| |||| ||| | ||   ||||||||||||||    
T  20621324 caattataaaataacaagtagattactaatccatgtcactaatcgtccccgttaactttcttttacctccgttaaccacaaatcaaactcacaaaaaact 20621225  T
Q  187 aacacaa 193  Q
    | |||||    
T  20621224 agcacaa 20621218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 86 - 163
Target Start/End: Complemental strand, 9307799 - 9307724
Alignment:
Q  86 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgtta 163  Q
    ||||||||| ||||||| |||||| |||| |||| |||||||||| ||||||||||||||||||||||||||| ||||    
T  9307799 tagccaatt-taaaatagcacgtgcattactaatccatgtcacta-tcgtccccgttaaccctcttttacctccgtta 9307724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 156
Target Start/End: Original strand, 9302210 - 9302273
Alignment:
Q  93 ttataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacc 156  Q
    |||||||||||| ||||||||| |||| ||||| ||||||||||   |||||||||||||||||    
T  9302210 ttataaaataactcgtggattaataatccatgtaactaatcgtcattgttaaccctcttttacc 9302273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 156
Target Start/End: Original strand, 9306648 - 9306711
Alignment:
Q  93 ttataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacc 156  Q
    |||||||||||| ||||||||| |||| ||||| ||||||||||   |||||||||||||||||    
T  9306648 ttataaaataactcgtggattaataatccatgtaactaatcgtcattgttaaccctcttttacc 9306711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 45022668 - 45022631
Alignment:
Q  43 ttgaacttttctttcaaaaaatacccttaattttaaat 80  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  45022668 ttgaacttttctttcaaaaaatacctttaattttaaat 45022631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 163
Target Start/End: Complemental strand, 9303319 - 9303286
Alignment:
Q  130 aatcgtccccgttaaccctcttttacctctgtta 163  Q
    ||||||||||||||||||||||||||||| ||||    
T  9303319 aatcgtccccgttaaccctcttttacctccgtta 9303286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 9302059 - 9302099
Alignment:
Q  40 gggttgaacttttctttcaaaaaatacccttaattttaaat 80  Q
    |||||| ||||||||||  ||||||||||||||||||||||    
T  9302059 gggttggacttttcttttcaaaaatacccttaattttaaat 9302099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 9306497 - 9306537
Alignment:
Q  40 gggttgaacttttctttcaaaaaatacccttaattttaaat 80  Q
    |||||| ||||||||||  ||||||||||||||||||||||    
T  9306497 gggttggacttttcttttcaaaaatacccttaattttaaat 9306537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 11321491 - 11321451
Alignment:
Q  40 gggttgaacttttctttcaaaaaatacccttaattttaaat 80  Q
    |||||| ||||||||||| |||| |||||||||||||||||    
T  11321491 gggttggacttttctttccaaaactacccttaattttaaat 11321451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 76
Target Start/End: Original strand, 47220854 - 47220890
Alignment:
Q  40 gggttgaacttttctttcaaaaaatacccttaatttt 76  Q
    ||||| |||||||||||| ||||||||||||||||||    
T  47220854 gggttaaacttttctttccaaaaatacccttaatttt 47220890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 90 - 193
Target Start/End: Original strand, 14494798 - 14494902
Alignment:
Q  90 caattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatcca-aagatactcacaaaaaactaa 188  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||| ||| |  | |||||||||||||||     
T  14494798 caattataaaataacacgtggattactaatccatgtcactaatcgtctccgttaaccctcttttacctctgttaaccacatcaaactcacaaaaaactag 14494897  T
Q  189 cacaa 193  Q
    |||||    
T  14494898 cacaa 14494902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 86 - 193
Target Start/End: Original strand, 237176 - 237284
Alignment:
Q  86 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat--actcacaaaaa 183  Q
    |||||||||||||||||||||||| |||| |||| |||||||||||||||| || |||||||||||||||||| |||| ||| ||||  | |||||||||    
T  237176 tagccaattataaaataacacgtg-attactaatccatgtcactaatcgtctcctttaaccctcttttacctccgttaaccatagatcaaatcacaaaaa 237274  T
Q  184 actaacacaa 193  Q
    |||| |||||    
T  237275 actagcacaa 237284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 86 - 155
Target Start/End: Complemental strand, 29699256 - 29699187
Alignment:
Q  86 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttac 155  Q
    ||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||| ||||||||    
T  29699256 tagccaattataaaataacacgtggattactaatccatgtcactgatcgtccccgttaaccatcttttac 29699187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 86 - 158
Target Start/End: Original strand, 50231531 - 50231603
Alignment:
Q  86 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctc 158  Q
    ||||||||||||||||||||||||||||| |||| ||||||| ||||||| ||||||||||||||||| ||||    
T  50231531 tagccaattataaaataacacgtggattactaatccatgtcaataatcgttcccgttaaccctctttttcctc 50231603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 86 - 154
Target Start/End: Original strand, 8528219 - 8528287
Alignment:
Q  86 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctctttta 154  Q
    ||||||||||||||||||||||||||||| |||| ||||||| | |||||||| |||||||||||||||    
T  8528219 tagccaattataaaataacacgtggattactaatccatgtcaatgatcgtccctgttaaccctctttta 8528287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 86 - 187
Target Start/End: Original strand, 9041223 - 9041327
Alignment:
Q  86 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat---actcacaaaa 182  Q
    |||||||||||||||||| ||||| |||  |||| ||||||| |||||||  ||||||||||||||||||||| ||||  || ||||   ||||||||||    
T  9041223 tagccaattataaaataatacgtgaattgctaatccatgtcattaatcgtttccgttaaccctcttttacctccgttaatcatagatcaaactcacaaaa 9041322  T
Q  183 aacta 187  Q
    |||||    
T  9041323 aacta 9041327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 99 - 163
Target Start/End: Complemental strand, 20133102 - 20133038
Alignment:
Q  99 aataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgtta 163  Q
    |||||||||| ||||| |||| |||||||| |||||||| |||||||||||||||||||| ||||    
T  20133102 aataacacgtagattactaatccatgtcaccaatcgtcctcgttaaccctcttttacctccgtta 20133038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 105 - 157
Target Start/End: Complemental strand, 43575262 - 43575210
Alignment:
Q  105 acgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacct 157  Q
    |||||||||| |||| ||||||| ||||||||||| |||||||||||||||||    
T  43575262 acgtggattactaatccatgtcagtaatcgtccccattaaccctcttttacct 43575210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 163
Target Start/End: Original strand, 14245889 - 14245959
Alignment:
Q  93 ttataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgtta 163  Q
    |||||||||||||| | ||||| | ||  ||||||||||||||||| ||||||| |||||||| |||||||    
T  14245889 ttataaaataacacatagattacttatcgatgtcactaatcgtcccagttaaccttcttttacatctgtta 14245959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 87
Target Start/End: Complemental strand, 24162719 - 24162672
Alignment:
Q  40 gggttgaacttttctttcaaaaaatacccttaattttaaatataaata 87  Q
    |||||| ||||||||||| || |||||||||||||||||||| |||||    
T  24162719 gggttggacttttctttccaagaatacccttaattttaaatacaaata 24162672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 87
Target Start/End: Complemental strand, 43577230 - 43577183
Alignment:
Q  40 gggttgaacttttctttcaaaaaatacccttaattttaaatataaata 87  Q
    |||||| ||||||||||||||||||||||| |||||| |||| |||||    
T  43577230 gggttggacttttctttcaaaaaataccctcaattttcaatacaaata 43577183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 87
Target Start/End: Original strand, 50231398 - 50231445
Alignment:
Q  40 gggttgaacttttctttcaaaaaatacccttaattttaaatataaata 87  Q
    |||||||| ||||||||  ||||||||||||||||||||||| |||||    
T  50231398 gggttgaaattttcttttcaaaaatacccttaattttaaatacaaata 50231445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 152
Target Start/End: Original strand, 49265943 - 49266009
Alignment:
Q  86 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttt 152  Q
    |||| |||||||||||||| |||| |||| ||||   |||||||||| || ||||||||||||||||    
T  49265943 tagctaattataaaataacgcgtgaattactaatcagtgtcactaattgttcccgttaaccctcttt 49266009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 9046420 - 9046387
Alignment:
Q  86 tagccaattataaaataacacgtggattagtaat 119  Q
    ||||||||||||||||||||||||||||| ||||    
T  9046420 tagccaattataaaataacacgtggattactaat 9046387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 87
Target Start/End: Original strand, 14245797 - 14245841
Alignment:
Q  43 ttgaacttttctttcaaaaaatacccttaattttaaatataaata 87  Q
    |||||||||| |||| |||||||||||| |||||||||| |||||    
T  14245797 ttgaacttttatttctaaaaatacccttgattttaaatacaaata 14245841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 76
Target Start/End: Original strand, 14494661 - 14494697
Alignment:
Q  40 gggttgaacttttctttcaaaaaatacccttaatttt 76  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  14494661 gggttggacttttctttccaaaaatacccttaatttt 14494697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 41 - 198
Target Start/End: Complemental strand, 44973148 - 44972992
Alignment:
Q  41 ggttgaacttttctttcaaaaaatacccttaattttaaatataaatagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccg 140  Q
    ||||| ||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||      ||||||||| ||| ||||||||  ||||||    
T  44973148 ggttggacttttctttctaaaaatacccttaattttaaatacaaatagtcaattataaaataac------attagtaatccatctcactaattttccccg 44973055  T
Q  141 ttaaccctcttttacctctgttatccaaagat---actcacaaaaaacta--acacaacaaaa 198  Q
    |||||||| |||||||||  ||| ||||||||   | |||||||||||||  |||||||||||    
T  44973054 ttaacccttttttacctccattaaccaaagatcaaattcacaaaaaactagcacacaacaaaa 44972992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 90 - 163
Target Start/End: Complemental strand, 35193507 - 35193434
Alignment:
Q  90 caattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgtta 163  Q
    |||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||    
T  35193507 caattataaaataacatgtggattactaatccatgtcactaatcgtccccgttaaccctcttttacctccgtta 35193434  T

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Target: chr2; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 90 - 246
Target Start/End: Original strand, 7061867 - 7062028
Alignment:
Q  90 caattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat---actcacaaaaaact 186  Q
    ||||||||||||||||| ||||||| |||||||| ||||||||||||| |||||| ||||||||||||| |||||||| | ||   ||||||||||||||    
T  7061867 caattataaaataacacatggattactaattcatatcactaatcgtcctcgttaa-cctcttttacctccgttatccacatatcaaactcacaaaaaact 7061965  T
Q  187 a--acacaacaaaatttcatgtta-cnnnnnnncaaccgcttttatgttgtacatctgtgttg 246  Q
    |  ||| |||||||  |||||||| |       |||||| |||||||||||||||||||||||    
T  7061966 agcacaaaacaaaaactcatgttacctttttatcaaccgattttatgttgtacatctgtgttg 7062028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 86 - 163
Target Start/End: Original strand, 309848 - 309925
Alignment:
Q  86 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgtta 163  Q
    |||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||| | ||||||||||| ||||    
T  309848 tagccaattataaaataacatgtggattactaatccatgtcactaatcgtccccgttaaacttcttttacctccgtta 309925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 90 - 245
Target Start/End: Original strand, 43528444 - 43528603
Alignment:
Q  90 caattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat-actcacaaaaaacta- 187  Q
    |||||||||||||||| ||| |||| |||| |||||||||||||||| ||||||||||||||||||||| |||| ||| | || |  | ||||||||||     
T  43528444 caattataaaataacatgtgaattactaatccatgtcactaatcgtctccgttaaccctcttttacctccgttaaccacatatcaaactcaaaaaactag 43528543  T
Q  188 -acacaacaaaatttcatgttac-nnnnnnncaaccgcttttatgttgtacatctgtgtt 245  Q
     ||| ||||||| ||||||||||        |||||| ||||||||||||||||||||||    
T  43528544 cacaaaacaaaaattcatgttacttttttatcaaccgattttatgttgtacatctgtgtt 43528603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 86 - 246
Target Start/End: Complemental strand, 44539602 - 44539436
Alignment:
Q  86 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat---actcacaaaa 182  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||| ||| | ||||||| ||||||||||  |||| ||| | ||   ||||||||||    
T  44539602 tagccaattataaaataacacgtggattactaattcatgtcattaattgtcacagttaaccttcttttaccttcgttaaccacaaatcaaactcacaaaa 44539503  T
Q  183 aacta--acacaacaaaatttcatgttac-nnnnnnncaaccgcttttatgttgtacatctgtgttg 246  Q
    ||| |  ||| |||||||  |||||||||        |||||| |||||||||||||||||||||||    
T  44539502 aacaagcacaaaacaaaaaatcatgttacttttttatcaaccgattttatgttgtacatctgtgttg 44539436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 86 - 163
Target Start/End: Original strand, 13594515 - 13594592
Alignment:
Q  86 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgtta 163  Q
    |||| ||||||||||||||| |||||||| |||| ||||| |||||||||| || |||||||||||||||||| ||||    
T  13594515 tagctaattataaaataacatgtggattactaatccatgtaactaatcgtctccattaaccctcttttacctccgtta 13594592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 87
Target Start/End: Complemental strand, 19901656 - 19901609
Alignment:
Q  40 gggttgaacttttctttcaaaaaatacccttaattttaaatataaata 87  Q
    |||||| ||||||||||| ||||||||||||||||||||||| |||||    
T  19901656 gggttggacttttctttccaaaaatacccttaattttaaataaaaata 19901609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 137
Target Start/End: Complemental strand, 25048013 - 25047962
Alignment:
Q  86 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtcc 137  Q
    ||||||||||||||||||||| ||||||| ||||  ||||||||||||||||    
T  25048013 tagccaattataaaataacacatggattactaatgtatgtcactaatcgtcc 25047962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 76
Target Start/End: Complemental strand, 44539738 - 44539702
Alignment:
Q  40 gggttgaacttttctttcaaaaaatacccttaatttt 76  Q
    |||||||||||||||||| ||||||||||||||||||    
T  44539738 gggttgaacttttctttccaaaaatacccttaatttt 44539702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 87
Target Start/End: Original strand, 7061734 - 7061781
Alignment:
Q  40 gggttgaacttttctttcaaaaaatacccttaattttaaatataaata 87  Q
    |||||||||||||||||  |||||||||||| |||||||||| |||||    
T  7061734 gggttgaacttttcttttcaaaaatacccttgattttaaatacaaata 7061781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 87
Target Start/End: Original strand, 21956532 - 21956579
Alignment:
Q  40 gggttgaacttttctttcaaaaaatacccttaattttaaatataaata 87  Q
    |||||| ||||||||||  ||||||||||||||||||||||| |||||    
T  21956532 gggttggacttttcttttcaaaaatacccttaattttaaatacaaata 21956579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 87
Target Start/End: Complemental strand, 8063290 - 8063236
Alignment:
Q  33 cattttcgggttgaacttttctttcaaaaaatacccttaattttaaatataaata 87  Q
    |||||| || ||||| ||||||||||||||||||||| |||||| |||| |||||    
T  8063290 catttttggattgaatttttctttcaaaaaataccctcaattttcaatacaaata 8063236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 147
Target Start/End: Original strand, 27339513 - 27339555
Alignment:
Q  105 acgtggattagtaattcatgtcactaatcgtccccgttaaccc 147  Q
    |||||||||| ||||||||||||||||||||| | ||||||||    
T  27339513 acgtggattactaattcatgtcactaatcgtctctgttaaccc 27339555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 76
Target Start/End: Original strand, 43528298 - 43528340
Alignment:
Q  34 attttcgggttgaacttttctttcaaaaaatacccttaatttt 76  Q
    ||||| |||||| ||||||||||| ||||||||||||||||||    
T  43528298 atttttgggttggacttttctttccaaaaatacccttaatttt 43528340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 76
Target Start/End: Original strand, 2221938 - 2221974
Alignment:
Q  40 gggttgaacttttctttcaaaaaatacccttaatttt 76  Q
    |||||||||||||||||| ||||||||||||| ||||    
T  2221938 gggttgaacttttctttccaaaaatacccttattttt 2221974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 88 - 193
Target Start/End: Original strand, 56467 - 56575
Alignment:
Q  88 gccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat---actcacaaaaaa 184  Q
    ||||||||||||||||||||||||||| |||| ||||||||||| |||| |||||||||||||||||||| ||||| ||| | ||   ||||||||||||    
T  56467 gccaattataaaataacacgtggattattaatccatgtcactaaacgtctccgttaaccctcttttacctttgttaaccacatatcaaactcacaaaaaa 56566  T
Q  185 ctaacacaa 193  Q
    ||| |||||    
T  56567 ctagcacaa 56575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 56333 - 56374
Alignment:
Q  40 gggttgaacttttctttcaaaaaatacccttaattttaaata 81  Q
    |||||| ||||||||||| |||||||||||||||| ||||||    
T  56333 gggttggacttttctttccaaaaatacccttaattataaata 56374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 86 - 155
Target Start/End: Original strand, 24432233 - 24432302
Alignment:
Q  86 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttac 155  Q
    |||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||    
T  24432233 tagccaattataaaataacatgtggaatactaattcatgtcactaatcgtccccgttaaccctcttttac 24432302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 90 - 163
Target Start/End: Complemental strand, 5592765 - 5592692
Alignment:
Q  90 caattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgtta 163  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||| | |||| |||| |||||||||||||||    
T  5592765 caattataaaataacacgtggattactaatccatgtcactaatcgttctcgttgacccacttttacctctgtta 5592692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 32889059 - 32889105
Alignment:
Q  41 ggttgaacttttctttcaaaaaatacccttaattttaaatataaata 87  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||||    
T  32889059 ggttgaacttttctttccaaaaatacccttaattttaaatacaaata 32889105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 26528069 - 26528112
Alignment:
Q  33 cattttcgggttgaacttttctttcaaaaaatacccttaatttt 76  Q
    |||||| |||||||||||||||||| ||||||||||||||||||    
T  26528069 catttttgggttgaacttttctttccaaaaatacccttaatttt 26528112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 32889177 - 32889217
Alignment:
Q  40 gggttgaacttttctttcaaaaaatacccttaattttaaat 80  Q
    |||||||||||||||||  ||||||||||||||||||||||    
T  32889177 gggttgaacttttcttttcaaaaatacccttaattttaaat 32889217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 86 - 163
Target Start/End: Complemental strand, 3567 - 3490
Alignment:
Q  86 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgtta 163  Q
    |||| |||||||||||||||||||||||| |||| ||| |||||||||||||  ||||||||||||||||||| ||||    
T  3567 tagctaattataaaataacacgtggattactaatccatatcactaatcgtccatgttaaccctcttttacctccgtta 3490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 17305 - 17180
Alignment:
Q  89 ccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat---actcacaaaaaac 185  Q
    ||||||||||||||| || ||||||| |||| |||||||||||| ||| |||||||||||||||||  || |||| ||| ||||   || ||||||||||    
T  17305 ccaattataaaataatacatggattactaatccatgtcactaattgtctccgttaaccctcttttagttccgttaaccatagatcaaacacacaaaaaac 17206  T
Q  186 ta--acacaacaaaatttcatgttac 209  Q
    ||  ||| ||||||| ||||||||||    
T  17205 tatcacaaaacaaaaattcatgttac 17180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 87
Target Start/End: Original strand, 48321 - 48376
Alignment:
Q  33 cattttcgggttgaacttttctttcaaaa-aatacccttaattttaaatataaata 87  Q
    |||||| |||||| |||||||||| |||| |||||||||||||||||||| |||||    
T  48321 catttttgggttggacttttcttttaaaaaaatacccttaattttaaatacaaata 48376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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