View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14575_low_24 (Length: 234)

Name: NF14575_low_24
Description: NF14575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14575_low_24
NF14575_low_24
[»] chr1 (2 HSPs)
chr1 (18-116)||(48046282-48046377)
chr1 (146-221)||(48046209-48046284)
[»] chr3 (1 HSPs)
chr3 (141-217)||(35213902-35213978)


Alignment Details
Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 116
Target Start/End: Complemental strand, 48046377 - 48046282
Alignment:
Q  18 acatgattttaactatggatttctacctccaaatttattacatactatcatagtttgagagttaagacacacttcaaagacttttaaacccacaccaaa 116  Q
    ||||||||| ||||| |||||||||||||||||||||||| |||   ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48046377 acatgatttaaactaaggatttctacctccaaatttattatata---tcatagtttgagagttaagacacacttcaaagacttttaaacccacaccaaa 48046282  T

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Target: chr1; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 146 - 221
Target Start/End: Complemental strand, 48046284 - 48046209
Alignment:
Q  146 aaaatttttatgcaacatataaaccaccattcatataatctttatctataatgatctcatccatattgataatttt 221  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  48046284 aaaatttttatgcaacatataaaccaccattcatagaatctttatctataatgatctcatccatattgataatttt 48046209  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 217
Target Start/End: Complemental strand, 35213978 - 35213902
Alignment:
Q  141 tgatgaaaatttttatgcaacatataaaccaccattcatataatctttatctataatgatctcatccatattgataa 217  Q
    |||||||| |||||||||||||| | || ||||| || || |||||||||||| ||||| |||||| ||||| ||||    
T  35213978 tgatgaaattttttatgcaacatttgaaacaccactcctagaatctttatctaaaatgacctcatcaatatttataa 35213902  T

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