View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14575_low_5 (Length: 461)
Name: NF14575_low_5
Description: NF14575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14575_low_5 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 3 - 461
Target Start/End: Complemental strand, 28267781 - 28267322
Alignment:
| Q |
3 |
agatggacatcatcaattagtagaagtgctatgtcactgaaaaaactcaaaccaccgctttctataccatatcgcgacactgcatcaaatttctattcat |
102 |
Q |
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| T |
28267781 |
agatggacttcatcaattagtagaagtgctatgtcactgaaaaaactcaaaccaccgctttctataccatatcgcgacactgcatcaaatttctattcat |
28267682 |
T |
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| Q |
103 |
tgaaaaatgaactttagccacctcatagtgtcaacaaatcagtcagtgtgtgtgtcagtctgacaggaaaaataaatgtttattgtgtctctttggattg |
202 |
Q |
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| T |
28267681 |
tgaaaaatgaactttagccacctcatagtgtcaacaaatcagtcagtgtgtgtgtcagtctgacaggaaaaataaatgtttattgtgtctctttggattg |
28267582 |
T |
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| Q |
203 |
aggaatacgtgcataaacatcataatttatgattactttgaaatctatgtccatttaatatttcaaagg-nnnnnnnngaaacaggaaagtacactaaag |
301 |
Q |
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| T |
28267581 |
aggaatacatgcataaacatcataatttatgattgctttgaaatctatgtccatttaatatttcaaaggaaaaaaaaagaaacaggaaagtacactaaag |
28267482 |
T |
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| Q |
302 |
attaaagtgtcttggtatacttatgtttagataactctcatttgaatactgacctctggagtggttagaatgatatctgcttcatttatatttcttggag |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28267481 |
attaaagtgtcttggtatacttatgtttagataactctcatttgaatactgacctctggagtggttagaatgatatctgcttcatttatatttcttggag |
28267382 |
T |
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| Q |
402 |
tgtaagattcattgtcacctgtcagctccaggcaacaaatcccccatggtccaaatttct |
461 |
Q |
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| T |
28267381 |
tgtaagattcattgtcacctgtcagctccaggcaacaaatcccccatggtccaaatttct |
28267322 |
T |
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