View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14575_low_9 (Length: 373)

Name: NF14575_low_9
Description: NF14575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14575_low_9
NF14575_low_9
[»] chr1 (22 HSPs)
chr1 (1-355)||(8861285-8861639)
chr1 (36-352)||(9124895-9125214)
chr1 (81-353)||(9069469-9069747)
chr1 (81-353)||(9085768-9086043)
chr1 (226-349)||(8978910-8979033)
chr1 (63-178)||(8978768-8978883)
chr1 (233-355)||(9337807-9337929)
chr1 (233-355)||(9364666-9364788)
chr1 (233-353)||(8927222-8927342)
chr1 (233-352)||(9236124-9236243)
chr1 (233-352)||(9377990-9378109)
chr1 (81-169)||(8962768-8962856)
chr1 (233-353)||(8939648-8939768)
chr1 (233-340)||(9242256-9242363)
chr1 (85-192)||(9097887-9097994)
chr1 (233-352)||(9300366-9300485)
chr1 (81-139)||(8939871-8939929)
chr1 (87-153)||(9235972-9236038)
chr1 (83-153)||(9378195-9378265)
chr1 (233-353)||(8962575-8962695)
chr1 (81-128)||(8927459-8927506)
chr1 (81-130)||(9495781-9495830)
[»] scaffold0690 (1 HSPs)
scaffold0690 (233-355)||(1875-1997)
[»] chr6 (4 HSPs)
chr6 (233-355)||(15910109-15910231)
chr6 (240-282)||(31145374-31145416)
chr6 (240-282)||(31171687-31171729)
chr6 (240-292)||(31201239-31201291)
[»] chr3 (1 HSPs)
chr3 (233-352)||(9171775-9171894)


Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 8861285 - 8861639
Alignment:
Q  1 taggaggcacaattaactcgatatcctctccggcttccaacatttgcacaacattttttattgatggacgatttgtcggttgccattgaatgcaccaaag 100  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  8861285 taggaggcacaattaactcgatatcctctccggtttccaacatttgcacaacattttttattgatggacgatttatcggttgccattgaatgcaccaaag 8861384  T
Q  101 tccaacaattgcaagtttctttgcaattttaagatctccttcatcctcaatatggatacgtatatctccttccaataagttatggatccattctgggtat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8861385 tccaacaattgcaagtttctttgcaattttaagatctccttcatcctcaatatggatacttatatctccttccaataagttatggatccattctgggtat 8861484  T
Q  201 agcacatgaaaagtttctgcaaacgtgtctacattctttctccctccaaccatttctagcaacaacattccgtaactgtaaatatctgacttaagagaaa 300  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  8861485 agcacatgaaaagtttctgcagacgtgtctacattctttctccctccaaccatttctagcaacaacattccgtaactgtaaatatctgacttaagagaca 8861584  T
Q  301 cattcccaaaatttcttgatagaacttcaggcgccatgtatcccaaggttccctt 355  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8861585 cattcccaaaatttcttgatagaacttcaggcgccatgtatcccaaggttccctt 8861639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 36 - 352
Target Start/End: Original strand, 9124895 - 9125214
Alignment:
Q  36 tccaacatttgcacaacattttttattgatggacgatttgtcggttgccattgaatgcaccaaagtccaacaattgcaagtttctttgcaattttaagat 135  Q
    ||||||||||| |  |||  |||||| || ||||||||| | || ||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||    
T  9124895 tccaacatttgtatcacagcttttatggagggacgatttattggctgccattgaatacaccaaagtccaacaattgcgagtttctttgcaattttaatat 9124994  T
Q  136 ctccttcatcctcaatatggatacgtatatctccttccaataagttatggatccattctgggtatagcacatgaaaagtttctgca---aacgtgtctac 232  Q
    |  | ||||| |||||||  ||| || ||||||||||||||| |||||| ||||||||||| ||||  ||||| ||| ||||  ||   || |  |||||    
T  9124995 catcctcatcttcaatatttatatgtgtatctccttccaataggttatgaatccattctggatataaaacatggaaattttcatcagacaaggaatctac 9125094  T
Q  233 attctttctccctccaaccatttctagcaacaacattccgtaactgtaaatatctgacttaagagaaacattcccaaaatttcttgatagaacttcaggc 332  Q
    |||||| |  |||||||||| ||| ||||||||||| || ||||| |||||||| |||||| |||||||||| |||||||||| ||| | |||||||||     
T  9125095 attcttgcgtcctccaaccaattccagcaacaacatcccataactataaatatcagacttacgagaaacatttccaaaatttcgtgacaaaacttcaggt 9125194  T
Q  333 gccatgtatcccaaggttcc 352  Q
    ||||| ||||||||||||||    
T  9125195 gccatatatcccaaggttcc 9125214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 81 - 353
Target Start/End: Original strand, 9069469 - 9069747
Alignment:
Q  81 tgccattgaatgcaccaaagtccaacaattgcaagtttctttgcaattttaagatctcc---ttcatcctcaatatggatacgtatatctccttccaata 177  Q
    ||||| ||||| ||||||||||| ||||||||||||||| |||||||||||  ||  ||   |||||| |||| ||  ||| |||| |||||||||||||    
T  9069469 tgccactgaatacaccaaagtccgacaattgcaagtttccttgcaattttagcattgccaacttcatcttcaacatttatatgtatgtctccttccaata 9069568  T
Q  178 agttatggatccattctgggtatagcacatgaaaagtttctgcaaa---cgtgtctacattctttctccctccaaccatttctagcaacaacattccgta 274  Q
    ||||||| |||||||| |||||||  ||||| |||  ||||||| |   ||  |||||||||||||| ||||||||||||||||||||||||||||| ||    
T  9069569 agttatgaatccattccgggtataaaacatgcaaatcttctgcagatgacgaatctacattctttcttcctccaaccatttctagcaacaacattccata 9069668  T
Q  275 actgtaaatatctgacttaagagaaacattcccaaaatttcttgatagaacttcaggcgccatgtatcccaaggttccc 353  Q
    |||||| ||||| ||||||||||||||||| ||||||||||  || |  ||||| || ||||| |||||||||||||||    
T  9069669 actgtatatatcagacttaagagaaacatttccaaaatttcgagacactacttcgggtgccatatatcccaaggttccc 9069747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 81 - 353
Target Start/End: Original strand, 9085768 - 9086043
Alignment:
Q  81 tgccattgaatgcaccaaagtccaacaattgcaagtttctttgcaattttaagatctccttcatcctcaatatggatacgtatatctccttccaataagt 180  Q
    ||||| ||||||||||||||||| |||||||| |||||||||||||  ||   ||| ||||| || |||||||  |||  ||| |||||||||||||| |    
T  9085768 tgccactgaatgcaccaaagtccgacaattgcgagtttctttgcaaacttcgcatcaccttcgtcttcaatattcatatatatgtctccttccaataaat 9085867  T
Q  181 tatggatccattctgggtatagcacatgaaaagtttctgcaaacgt---gtctacattctttctccctccaaccatttctagcaacaacattccgtaact 277  Q
    |||  ||||||||| ||||||    ||| |||||||||||| | |    |||||||||||| || || |||||||| |||||||||||||| || |||||    
T  9085868 tataaatccattctcggtataaactatggaaagtttctgcagatgatgagtctacattcttccttccaccaaccatctctagcaacaacatcccataact 9085967  T
Q  278 gtaaatatctgacttaagagaaacattcccaaaatttcttgatagaacttcaggcgccatgtatcccaaggttccc 353  Q
     |||||||| |||||||||||||||||||||||||||| ||| | ||||||||||||||| |||||||||||||||    
T  9085968 ataaatatcagacttaagagaaacattcccaaaatttcgtgacaaaacttcaggcgccatatatcccaaggttccc 9086043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 226 - 349
Target Start/End: Original strand, 8978910 - 8979033
Alignment:
Q  226 tgtctacattctttctccctccaaccatttctagcaacaacattccgtaactgtaaatatctgacttaagagaaacattcccaaaatttcttgatagaac 325  Q
    |||||| |||||| || ||| ||||||||||||||||||||||||| || || |||||||| || |||||||| ||||| |||||||||||||| |||||    
T  8978910 tgtctatattcttccttcctgcaaccatttctagcaacaacattccatagctataaatatcagatttaagagacacattaccaaaatttcttgacagaac 8979009  T
Q  326 ttcaggcgccatgtatcccaaggt 349  Q
    |||||| ||||| |||||||||||    
T  8979010 ttcaggtgccatatatcccaaggt 8979033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 63 - 178
Target Start/End: Original strand, 8978768 - 8978883
Alignment:
Q  63 gatggacgatttgtcggttgccattgaatgcaccaaagtccaacaattgcaagtttctttgcaattttaagatctccttcatcctcaatatggatacgta 162  Q
    ||||||||||||   || ||||| |||||||||||||||||||||||||||||||| || |||||||||  ||| |  ||||| ||||| |||||| |||    
T  8978768 gatggacgatttccggggtgccactgaatgcaccaaagtccaacaattgcaagttttttggcaattttataatcacactcatcgtcaatgtggatatgta 8978867  T
Q  163 tatctccttccaataa 178  Q
    | ||||||||||||||    
T  8978868 tgtctccttccaataa 8978883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 233 - 355
Target Start/End: Complemental strand, 9337929 - 9337807
Alignment:
Q  233 attctttctccctccaaccatttctagcaacaacattccgtaactgtaaatatctgacttaagagaaacattcccaaaatttcttgatagaacttcaggc 332  Q
    ||||||||| |||||||||||||| | ||| ||||| ||||||||||| ||||| ||||||  ||| ||||| ||||| |||||||| | |||||||||     
T  9337929 attctttcttcctccaaccatttccaacaataacataccgtaactgtatatatcagacttataagagacattaccaaagtttcttgaaaaaacttcaggt 9337830  T
Q  333 gccatgtatcccaaggttccctt 355  Q
    |||||||| || || ||||||||    
T  9337829 gccatgtagcctaatgttccctt 9337807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 233 - 355
Target Start/End: Complemental strand, 9364788 - 9364666
Alignment:
Q  233 attctttctccctccaaccatttctagcaacaacattccgtaactgtaaatatctgacttaagagaaacattcccaaaatttcttgatagaacttcaggc 332  Q
    ||||||||| |||||||||||||| | ||| ||||| ||||||||||| ||||| ||||||  ||| ||||| ||||| |||||||| | |||||||||     
T  9364788 attctttcttcctccaaccatttccaacaataacataccgtaactgtatatatcagacttataagagacattaccaaagtttcttgaaaaaacttcaggt 9364689  T
Q  333 gccatgtatcccaaggttccctt 355  Q
    |||||||| || || ||||||||    
T  9364688 gccatgtagcctaatgttccctt 9364666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 233 - 353
Target Start/End: Complemental strand, 8927342 - 8927222
Alignment:
Q  233 attctttctccctccaaccatttctagcaacaacattccgtaactgtaaatatctgacttaagagaaacattcccaaaatttcttgatagaacttcaggc 332  Q
    ||||||||| ||||||||||| |||||||||||||| ||||| ||||| ||||| ||||||  ||| ||||||||||| ||||  || | |||||||||     
T  8927342 attctttcttcctccaaccatctctagcaacaacataccgtagctgtatatatcagacttataagagacattcccaaagtttcgagaaaaaacttcaggt 8927243  T
Q  333 gccatgtatcccaaggttccc 353  Q
    |||||||| || || ||||||    
T  8927242 gccatgtaacctaatgttccc 8927222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 233 - 352
Target Start/End: Original strand, 9236124 - 9236243
Alignment:
Q  233 attctttctccctccaaccatttctagcaacaacattccgtaactgtaaatatctgacttaagagaaacattcccaaaatttcttgatagaacttcaggc 332  Q
    ||||||||| || |||||||| || ||||||||||| ||||| || |||||||| ||||||  ||||||||| || || ||||| || | |||||||||     
T  9236124 attctttcttccaccaaccatctcaagcaacaacataccgtagctataaatatcagacttataagaaacatttccgaagtttctcgagaaaacttcaggt 9236223  T
Q  333 gccatgtatcccaaggttcc 352  Q
    || |||||||||||||||||    
T  9236224 gcaatgtatcccaaggttcc 9236243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 233 - 352
Target Start/End: Complemental strand, 9378109 - 9377990
Alignment:
Q  233 attctttctccctccaaccatttctagcaacaacattccgtaactgtaaatatctgacttaagagaaacattcccaaaatttcttgatagaacttcaggc 332  Q
    ||||||||| ||||||||||| ||||||||||| |||||||| || |||||||| |||||   ||||||||| || || |||||||| | |||||||||     
T  9378109 attctttctacctccaaccatctctagcaacaatattccgtagctataaatatcagacttgtaagaaacatttccgaagtttcttgagaaaacttcaggt 9378010  T
Q  333 gccatgtatcccaaggttcc 352  Q
    || ||||| ||||| |||||    
T  9378009 gcaatgtagcccaatgttcc 9377990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 81 - 169
Target Start/End: Complemental strand, 8962856 - 8962768
Alignment:
Q  81 tgccattgaatgcaccaaagtccaacaattgcaagtttctttgcaattttaagatctccttcatcctcaatatggatacgtatatctcc 169  Q
    ||||| ||||||||||||||||| |||||||| ||||||||||||||| ||  |||||| || || |||||| ||||| ||||||||||    
T  8962856 tgccactgaatgcaccaaagtccgacaattgctagtttctttgcaattctataatctccatcttcatcaatagggatatgtatatctcc 8962768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 233 - 353
Target Start/End: Complemental strand, 8939768 - 8939648
Alignment:
Q  233 attctttctccctccaaccatttctagcaacaacattccgtaactgtaaatatctgacttaagagaaacattcccaaaatttcttgatagaacttcaggc 332  Q
    ||||||||| ||||||||||| || |||| |||||| ||||| ||||| ||||| ||||||  ||| ||||||||||| ||||  || | |||||||||     
T  8939768 attctttcttcctccaaccatctccagcagcaacataccgtagctgtatatatcagacttataagagacattcccaaagtttcgagaaaaaacttcaggt 8939669  T
Q  333 gccatgtatcccaaggttccc 353  Q
    |||||||| || || ||||||    
T  8939668 gccatgtaccctaaagttccc 8939648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 233 - 340
Target Start/End: Original strand, 9242256 - 9242363
Alignment:
Q  233 attctttctccctccaaccatttctagcaacaacattccgtaactgtaaatatctgacttaagagaaacattcccaaaatttcttgatagaacttcaggc 332  Q
    ||||||||| ||||||||||| || | ||| ||||| ||||||||||| | ||| ||||||  ||| ||||| ||||||||||| || | |||||||||     
T  9242256 attctttcttcctccaaccatctccaacaataacataccgtaactgtatacatcggacttataagagacatttccaaaatttctagaaaaaacttcaggt 9242355  T
Q  333 gccatgta 340  Q
    ||||||||    
T  9242356 gccatgta 9242363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 85 - 192
Target Start/End: Original strand, 9097887 - 9097994
Alignment:
Q  85 attgaatgcaccaaagtccaacaattgcaagtttctttgcaattttaagatctccttcatcctcaatatggatacgtatatctccttccaataagttatg 184  Q
    ||||||||||||||||| |  ||||||||||||||||||| | ||||| ||| |||||  | |||||||  |||  ||| ||||||||||||||| | ||    
T  9097887 attgaatgcaccaaagttcggcaattgcaagtttctttgccagtttaacatcaccttccccttcaatatttatatatatgtctccttccaataaggtttg 9097986  T
Q  185 gatccatt 192  Q
     |||||||    
T  9097987 aatccatt 9097994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 352
Target Start/End: Complemental strand, 9300485 - 9300366
Alignment:
Q  233 attctttctccctccaaccatttctagcaacaacattccgtaactgtaaatatctgacttaagagaaacattcccaaaatttcttgatagaacttcaggc 332  Q
    |||||| || || |||||||| || ||||||||||| || ||||| || ||||| ||||||  ||| ||||||||||| ||||| || | |||||| ||     
T  9300485 attcttccttcccccaaccatctccagcaacaacatgccataactatatatatcggacttataagagacattcccaaagtttctagaaaaaacttcgggt 9300386  T
Q  333 gccatgtatcccaaggttcc 352  Q
    ||||||||||| || |||||    
T  9300385 gccatgtatcctaatgttcc 9300366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 139
Target Start/End: Complemental strand, 8939929 - 8939871
Alignment:
Q  81 tgccattgaatgcaccaaagtccaacaattgcaagtttctttgcaattttaagatctcc 139  Q
    ||||| ||||||||||||||||| ||||| || ||||||||||||||| ||| ||||||    
T  8939929 tgccactgaatgcaccaaagtccgacaatcgctagtttctttgcaattctaaaatctcc 8939871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 153
Target Start/End: Original strand, 9235972 - 9236038
Alignment:
Q  87 tgaatgcaccaaagtccaacaattgcaagtttctttgcaattttaagatctccttcatcctcaatat 153  Q
    ||||| ||||||||||| || |  |||||||||||||||||| ||| |||||| |||||||||||||    
T  9235972 tgaatacaccaaagtccgaccagcgcaagtttctttgcaattctaacatctccctcatcctcaatat 9236038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 153
Target Start/End: Complemental strand, 9378265 - 9378195
Alignment:
Q  83 ccattgaatgcaccaaagtccaacaattgcaagtttctttgcaattttaagatctccttcatcctcaatat 153  Q
    ||||||||| ||||||||||| || |  |||||||||||||| ||| ||| |||||| |||||||||||||    
T  9378265 ccattgaatacaccaaagtccgaccagcgcaagtttctttgcgattctaacatctccctcatcctcaatat 9378195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 353
Target Start/End: Complemental strand, 8962695 - 8962575
Alignment:
Q  233 attctttctccctccaaccatttctagcaacaacattccgtaactgtaaatatctgacttaagagaaacattcccaaaatttcttgatagaacttcaggc 332  Q
    ||||||||| ||||| ||||| || |||| ||||||||| || ||||| ||||| || |||  ||| ||||||||||| ||||  || |  ||||||||     
T  8962695 attctttcttcctccgaccatctccagcagcaacattccatagctgtatatatcagatttataagagacattcccaaagtttcgagaaaatacttcaggt 8962596  T
Q  333 gccatgtatcccaaggttccc 353  Q
    ||||||||||| || ||||||    
T  8962595 gccatgtatcctaatgttccc 8962575  T

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Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 81 - 128
Target Start/End: Complemental strand, 8927506 - 8927459
Alignment:
Q  81 tgccattgaatgcaccaaagtccaacaattgcaagtttctttgcaatt 128  Q
    ||||| ||||||||||||||||| |||||||| ||||| |||||||||    
T  8927506 tgccactgaatgcaccaaagtccgacaattgctagtttttttgcaatt 8927459  T

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Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 130
Target Start/End: Complemental strand, 9495830 - 9495781
Alignment:
Q  81 tgccattgaatgcaccaaagtccaacaattgcaagtttctttgcaatttt 130  Q
    ||||||||||| |||||||||||| |||| ||||||||||| || |||||    
T  9495830 tgccattgaatacaccaaagtccagcaatcgcaagtttcttcgctatttt 9495781  T

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Target: scaffold0690 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 233 - 355
Target Start/End: Complemental strand, 1997 - 1875
Alignment:
Q  233 attctttctccctccaaccatttctagcaacaacattccgtaactgtaaatatctgacttaagagaaacattcccaaaatttcttgatagaacttcaggc 332  Q
    ||||||||| ||||||||||| || | ||| ||||| ||||||||||| ||||| ||||||  ||| ||||| ||||||||||| || | |||||||||     
T  1997 attctttcttcctccaaccatctccaacaataacataccgtaactgtatatatcggacttataagagacatttccaaaatttctagaaaaaacttcaggt 1898  T
Q  333 gccatgtatcccaaggttccctt 355  Q
    |||||||| || || ||||||||    
T  1897 gccatgtagcctaatgttccctt 1875  T

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Target: chr6 (Bit Score: 47; Significance: 9e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 233 - 355
Target Start/End: Original strand, 15910109 - 15910231
Alignment:
Q  233 attctttctccctccaaccatttctagcaacaacattccgtaactgtaaatatctgacttaagagaaacattcccaaaatttcttgatagaacttcaggc 332  Q
    ||||||||| ||||||||||| || | ||| ||||| ||||||||||| ||||| ||||||  ||| ||||| ||||||||||| || | |||||||||     
T  15910109 attctttcttcctccaaccatctccaacaataacataccgtaactgtatatatcggacttataagagacatttccaaaatttctagaaaaaacttcaggt 15910208  T
Q  333 gccatgtatcccaaggttccctt 355  Q
    |||||||| || || ||||||||    
T  15910209 gccatgtagcctaatgttccctt 15910231  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 31145374 - 31145416
Alignment:
Q  240 ctccctccaaccatttctagcaacaacattccgtaactgtaaa 282  Q
    ||||||||||||||||||||||||| |||||| ||||| ||||    
T  31145374 ctccctccaaccatttctagcaacatcattccataactataaa 31145416  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 31171687 - 31171729
Alignment:
Q  240 ctccctccaaccatttctagcaacaacattccgtaactgtaaa 282  Q
    ||||||||||||||||||||||||| |||||| ||||| ||||    
T  31171687 ctccctccaaccatttctagcaacatcattccataactataaa 31171729  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 292
Target Start/End: Original strand, 31201239 - 31201291
Alignment:
Q  240 ctccctccaaccatttctagcaacaacattccgtaactgtaaatatctgactt 292  Q
    ||||||||||||||||| ||||||| |||||| ||||| |||| ||| |||||    
T  31201239 ctccctccaaccatttccagcaacatcattccataactataaacatcggactt 31201291  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 233 - 352
Target Start/End: Complemental strand, 9171894 - 9171775
Alignment:
Q  233 attctttctccctccaaccatttctagcaacaacattccgtaactgtaaatatctgacttaagagaaacattcccaaaatttcttgatagaacttcaggc 332  Q
    ||||||||| |||||||| ||||| |  | |||||| || || || || ||||| ||||||  ||| ||||||||||||||||| || | |||||| ||     
T  9171894 attctttcttcctccaacaatttccaatagcaacataccatagctatatatatcagacttataagagacattcccaaaatttctagaaaaaacttcgggt 9171795  T
Q  333 gccatgtatcccaaggttcc 352  Q
    ||||||||||| || |||||    
T  9171794 gccatgtatcctaatgttcc 9171775  T

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