View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14576_high_1 (Length: 818)
Name: NF14576_high_1
Description: NF14576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14576_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 743; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 743; E-Value: 0
Query Start/End: Original strand, 20 - 794
Target Start/End: Complemental strand, 2422308 - 2421534
Alignment:
| Q |
20 |
caagaaacaaattctcataacgattttcacaaaaaggacatgcatttgtacattgaacaccttttctttgaaatatatcccttgttgaaaggaaaccttt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2422308 |
caagaaacaaattctcataacgattttcacaaaaaggacatgcatttgtacattgaacaccttttctttgaaatatatcccttgttgaaaggcaaccttt |
2422209 |
T |
|
| Q |
120 |
cacaactcgccacaataatattttaactctttgtggtatcttcaaccttcatagcttaccccaatcactcggaatttgatacttctcattatcaatgagt |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2422208 |
cacaactcgccacaataatattttaactctttgtggtatcttcaagcttcatagcttaccccaatcactcggaattcgatacttctcattatcaatgagt |
2422109 |
T |
|
| Q |
220 |
gtttccattgcaaacaagcattcatattttacggtgtacatgtctttgttattgtatttccacaccctggtgttatcttcacctcggtgcaccattgcaa |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2422108 |
gtttccattgcaaacaagcattcatattttacggtgtacatgtctttgttattgtatttccacaccctggtgttatcttcacctcggtgcaccattgcaa |
2422009 |
T |
|
| Q |
320 |
tgctactaatttcctctcgatatctagcatttagcaaactattaatgatgctccacttccagtttttgtgccctgcattatcaaatatgagacattgaga |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2422008 |
tgctactaatttcctctcgatatctagcatttagcaaactattaatgatactccacttccagtttttgtgccctgcattatcaaatatgagacattgaga |
2421909 |
T |
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| Q |
420 |
gtctcgtacccgtgaggtattgagctggtaatatatgaattttcctagcacctcaaccaaggatctttccaaacttgacaaattctccatttctaatgcg |
519 |
Q |
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| T |
2421908 |
gtctcgtacccgtgaggtattgagctggtaatatatgaattttcctagcacctcaaccaaggatctttccaaacttgacaaattctccatttctaatgtg |
2421809 |
T |
|
| Q |
520 |
ctatctcattccacctctaactataacatgtgaatcatggatgctacgccaaataaaattgggttattgtctaaacgaccccaaaaaagtcacatttaga |
619 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
2421808 |
ctatctcattccacctctaactataacatgtgaatcatggatgctacgccaaataaaattgggttattgcctaaatgaccccaaaaaagtcacatttaga |
2421709 |
T |
|
| Q |
620 |
aaatacccggctttgaagacacgtgaaacaatagtatcttggttggttaagagacaccaaccttgcttctttaaaataggcaatttgaaaccaaaatgat |
719 |
Q |
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| T |
2421708 |
aaatacccggctttgaagacacgtgaaacaatagtatcttggttagttaagagacaccaaccttgcttctttaaaataggcaatttgaaaccaaaatgat |
2421609 |
T |
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| Q |
720 |
gacaaaaaccaatacgtccatattcattctcattgttaatttatcccaacttagccccatttgattcctatacct |
794 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2421608 |
gacaaaaaccaatacgtccatattcattctcattgttaatttatcccaacttagccccatttgattcctatacct |
2421534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 522 - 577
Target Start/End: Complemental strand, 34406957 - 34406902
Alignment:
| Q |
522 |
atctcattccacctctaactataacatgtgaatcatggatgctacgccaaataaaa |
577 |
Q |
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| T |
34406957 |
atctcattccacctctaactataacatgtgaaaaatgaatactacgcgaaataaaa |
34406902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 83
Target Start/End: Complemental strand, 34407361 - 34407319
Alignment:
| Q |
41 |
gattttcacaaaaaggacatgcatttgtacattgaacaccttt |
83 |
Q |
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|||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
34407361 |
gatttttacaaaaaggacatgcatatgtacattgaacaccttt |
34407319 |
T |
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