View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14576_high_13 (Length: 238)
Name: NF14576_high_13
Description: NF14576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14576_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 27005476 - 27005696
Alignment:
| Q |
1 |
tgaatcatctctcttctatatcattagtttagcccattctcaactagtgtgagactaaccactcacatttgaatacaagctaccagttcacaaatgcata |
100 |
Q |
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| T |
27005476 |
tgaatcatctctcttctatatcattagtttagcccattctcaactagtgtgagactaaccactcacatttgaatacaagctacccgttcacaaatgcata |
27005575 |
T |
|
| Q |
101 |
ttcatcaatattttctttccaattaaaaaaggggcatnnnnnnncaaacctgcttagcaagggcagtagcaaccatattcgaagtggcaatcgacagaaa |
200 |
Q |
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| T |
27005576 |
ttcatcaatattttctttccaattaaaaaaggggcctaaaaaaacaaacctgcttagcaagggcagtagcaaccatattcgaagtggcaatcgacagaaa |
27005675 |
T |
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| Q |
201 |
cataaaagagtaacccaaata |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
27005676 |
cataaaagagtaacccaaata |
27005696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 26991044 - 26991250
Alignment:
| Q |
1 |
tgaatcatctctcttctatatcattagtttagcccattctcaactagtgtgagactaaccactcacatttgaatacaagctaccagttcacaaatgcata |
100 |
Q |
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| T |
26991044 |
tgaattatctttattctatatcattagtttggctcatcctcaaccggtgtgagactaaccactcacatttgaatacaagatacccattcacaaa--caca |
26991141 |
T |
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| Q |
101 |
ttcatcaatattttctttc--caattaaaaaaggggcatnnnnnnncaaacctgcttagcaagggcagtagcaaccatattcgaagtggcaatcgacaga |
198 |
Q |
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| T |
26991142 |
ttcatcaaaattttctatatgcgaataaaaaa--------------caaacctgtttagcaagggcagtagcaaccatattcgaagtagcaatcgacaga |
26991227 |
T |
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| Q |
199 |
aacataaaagagtaacccaaata |
221 |
Q |
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|||||||||||||| |||||||| |
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| T |
26991228 |
aacataaaagagtagcccaaata |
26991250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 147 - 221
Target Start/End: Complemental strand, 26976283 - 26976209
Alignment:
| Q |
147 |
aacctgcttagcaagggcagtagcaaccatattcgaagtggcaatcgacagaaacataaaagagtaacccaaata |
221 |
Q |
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|||||| |||||||| ||||||||||||||||||||||| |||||||||| ||||||||| |||| |||||||| |
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| T |
26976283 |
aacctgtttagcaagtgcagtagcaaccatattcgaagtagcaatcgacaaaaacataaacaagtagcccaaata |
26976209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 26976742 - 26976628
Alignment:
| Q |
9 |
ctctcttctatatcattagtttagcccattctcaactagtgtgagactaaccactcacatttgaatacaagctaccagttcacaaatgcatattcatcaa |
108 |
Q |
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|||||||||||||||||| |||||| |||| ||| | | |||| |||||| |||||| | |||||| | | ||| ||||| |||||| ||||||||||| |
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| T |
26976742 |
ctctcttctatatcattaatttagctcattatcagccaatgtgggactaaacactcaaagttgaatgccaactatcagtttacaaatagatattcatcaa |
26976643 |
T |
|
| Q |
109 |
tattttctttccaat |
123 |
Q |
| |
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|||||||| |||||| |
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| T |
26976642 |
tattttctatccaat |
26976628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 203
Target Start/End: Original strand, 26946246 - 26946302
Alignment:
| Q |
147 |
aacctgcttagcaagggcagtagcaaccatattcgaagtggcaatcgacagaaacat |
203 |
Q |
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|||||| ||||| |||||||||||||||||||| ||||| |||| || |||||||| |
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| T |
26946246 |
aacctgtttagctagggcagtagcaaccatattggaagtagcaactgatagaaacat |
26946302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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