View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14576_high_8 (Length: 360)
Name: NF14576_high_8
Description: NF14576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14576_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 86 - 315
Target Start/End: Original strand, 45049535 - 45049764
Alignment:
| Q |
86 |
atggggtacatgaataagaaccggttttcttacgtgcaactgcaactgttattctttttagcctgaatatgtcctttgcaatcttttttagtgaagtctt |
185 |
Q |
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| T |
45049535 |
atggggtacatgaataagaaccggttttcttacgtgcaactgcaactgttattctttttagtctgaatatgtcctttccaatcttttttagtgaagtctt |
45049634 |
T |
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| Q |
186 |
ctataaatcgggacattagatacactttgtttatggtcaaatatgtacaggcatacttaatttgatgttagggttgtgaaaagatttgatagactgtaat |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45049635 |
ctataaatcgggacattagatacactttgtttatggtcaaatatgtacaggcatacttaatttgatgttagggttgtgaaaagatttgatagactgtaat |
45049734 |
T |
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| Q |
286 |
gttggcatttactattagtaggatgtataa |
315 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
45049735 |
gttggcatttactattagtaggatgtataa |
45049764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 7 - 91
Target Start/End: Original strand, 45049370 - 45049454
Alignment:
| Q |
7 |
agatcatcgtcatttttaaacttaaaatttgattgatgggatagaacaaaataactattgatttgtggacagtcaacccatgggg |
91 |
Q |
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| T |
45049370 |
agatcatcgtcatttttaaacttaaaatttgattgatgggatagaacaaaataactattggtttgtggacagtcaacccatgggg |
45049454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 39712045 - 39712114
Alignment:
| Q |
8 |
gatcatcgtcatttttaaacttaaaatttgattgatgggatagaacaaaataactattgatttgtggaca |
77 |
Q |
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| T |
39712045 |
gatcatcgtccgttttaagcttaaaatgagattgatgagagagaacaaaataacaattggtttgtggaca |
39712114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 86 - 311
Target Start/End: Original strand, 26126825 - 26127050
Alignment:
| Q |
86 |
atggggtacatgaataagaaccggttttcttacgtgcaactgcaactgttattctttttagcctgaatatgtcctttgcaatcttttttagtgaagtctt |
185 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
26126825 |
atggggtacatgaataagaaccggttttcttacatgcaactgcaactgttattttttttagtctgaatatgtcctttgcaatcttttttagtgaagtctt |
26126924 |
T |
|
| Q |
186 |
ctataaatcgggacattagatacactttgtttatggtcaaatatgtacaggcatacttaatttgatgttagggttgtgaaaagatttgatagactgtaat |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26126925 |
atataaatcgggacattagatacactttgtttatggtcaaatatgtacaggcatacttaatttgatgttagggttgtgaaaagatttgatagactgtaat |
26127024 |
T |
|
| Q |
286 |
gttggcatttactattagtaggatgt |
311 |
Q |
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|||||||||||||||||||||||||| |
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| T |
26127025 |
gttggcatttactattagtaggatgt |
26127050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 86 - 311
Target Start/End: Original strand, 26008439 - 26008664
Alignment:
| Q |
86 |
atggggtacatgaataagaaccggttttcttacgtgcaactgcaactgttattctttttagcctgaatatgtcctttgcaatcttttttagtgaagtctt |
185 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
26008439 |
atggggtacatgaataagaaccggttttcttacatgcaactgcaactgttattttttttagtctgaatatgtcctttgcaatcttttttagtgaagtctt |
26008538 |
T |
|
| Q |
186 |
ctataaatcgggacattagatacactttgtttatggtcaaatatgtacaggcatacttaatttgatgttagggttgtgaaaagatttgatagactgtaat |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26008539 |
atataaatcgggacattagatacactttgtttatggtcaaatatgtacagacatacttaatttgatgttagggttgtgaaaagatttgatagactgtaat |
26008638 |
T |
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| Q |
286 |
gttggcatttactattagtaggatgt |
311 |
Q |
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|||||||||||||||||||||||||| |
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| T |
26008639 |
gttggcatttactattagtaggatgt |
26008664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 7 - 91
Target Start/End: Original strand, 25573733 - 25573817
Alignment:
| Q |
7 |
agatcatcgtcatttttaaacttaaaatttgattgatgggatagaacaaaataactattgatttgtggacagtcaacccatgggg |
91 |
Q |
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| T |
25573733 |
agatcatcgtcatttttaaacttaaaattagattgatgggatagaacaaaataactattggtttgtggacaatcaacccatgggg |
25573817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 7 - 91
Target Start/End: Original strand, 26008274 - 26008358
Alignment:
| Q |
7 |
agatcatcgtcatttttaaacttaaaatttgattgatgggatagaacaaaataactattgatttgtggacagtcaacccatgggg |
91 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
26008274 |
agatcatcgtcatttttaaacttaaaattagattgatgggatagaacaaaataactattggtttgtggacaatcaacccatgggg |
26008358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 7 - 91
Target Start/End: Original strand, 26126660 - 26126744
Alignment:
| Q |
7 |
agatcatcgtcatttttaaacttaaaatttgattgatgggatagaacaaaataactattgatttgtggacagtcaacccatgggg |
91 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
26126660 |
agatcatcgtcatttttaaacttaaaattagattgatgggatagaacaaaataactattggtttgtggacaatcaacccatgggg |
26126744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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