View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14576_low_10 (Length: 357)
Name: NF14576_low_10
Description: NF14576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14576_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 47457027 - 47457387
Alignment:
| Q |
1 |
aacttagctcatttacatattatcatgcattaagtataatctaatgatttggaaatcctatctatttttatataggatttgcaaatt------------- |
87 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47457027 |
aacttagctcatttacatattatcatgcattaagtataatctaatgatttggaaatcctatctatttttatataggatttgcaaattatttagtttctga |
47457126 |
T |
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| Q |
88 |
------attttctattctgtagtttttaagtgttccaatttccaaacaagatgatttgtgttgcaaaatttatgtctcatgctgcataaaacattgtcaa |
181 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
47457127 |
ataattattttctattctgtagtttttaagtgttccaatttccaaacaagatgatttgtgttgcaaaatttatgtctcatgttgcataaaacattgtcaa |
47457226 |
T |
|
| Q |
182 |
gtatgcagttgtaggacttttcagtttttggtcaaaataaaatattactagcttatacatccttttgtagaccacgcaatgcttgtatgaatgggaatga |
281 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47457227 |
gtatgcagttgtaggactttcaagtttttggtcaaaataaaatattactagcttatacatccttttgtagaccacgcaatgcttgtatgaatgggaatga |
47457326 |
T |
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| Q |
282 |
ccaatgcaatctctagagaagttttgatcaataacactattggattattggttatacttat |
342 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47457327 |
ccaatgcaatctctagagaagttttgatcaataacactattggattattggttatacttat |
47457387 |
T |
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