View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14576_low_11 (Length: 321)
Name: NF14576_low_11
Description: NF14576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14576_low_11 |
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| [»] scaffold0036 (1 HSPs) |
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| [»] scaffold0281 (3 HSPs) |
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| [»] scaffold0214 (2 HSPs) |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: scaffold0036 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 203 - 315
Target Start/End: Complemental strand, 47468 - 47356
Alignment:
| Q |
203 |
gttcgtttcaaagtggatggtatttttctcgcgtcactgccgaaagatagaggaaatggaagaatatttgcgagaaaaattaagaaaaaatgatgaccaa |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||| |
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| T |
47468 |
gttcgtttcaaagtggatggtatttttctcgcgtcactgccgaaagatagaggaaatggaaggatatttgcgagagaaattaagaaaaagtgatgaccaa |
47369 |
T |
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| Q |
303 |
atgggctacaatg |
315 |
Q |
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||||||||||||| |
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| T |
47368 |
atgggctacaatg |
47356 |
T |
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Target: scaffold0281 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: scaffold0281
Description:
Target: scaffold0281; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 203 - 315
Target Start/End: Original strand, 3284 - 3396
Alignment:
| Q |
203 |
gttcgtttcaaagtggatggtatttttctcgcgtcactgccgaaagatagaggaaatggaagaatatttgcgagaaaaattaagaaaaaatgatgaccaa |
302 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||| || |
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| T |
3284 |
gttcgtttcaaagtggatggtgtttttctcgcgtcactgccgaaagatagaggaaatggaagaattattgcgagagaaattaagaaaaagtgatgaggaa |
3383 |
T |
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| Q |
303 |
atgggctacaatg |
315 |
Q |
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||||||||||||| |
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| T |
3384 |
atgggctacaatg |
3396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0281; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 71 - 164
Target Start/End: Original strand, 3153 - 3245
Alignment:
| Q |
71 |
tcgtacaatgctggctccatgcccactaactataaataaatgaaacatttttcttgcagaaaaaacaaatgatacttatacactgtctaattaa |
164 |
Q |
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| T |
3153 |
tcgtacaattttggctccatgcccactaactataaataaatgaaacatttttcttgca-aaaaaaaaaattatacttatacattgtttaattaa |
3245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0281; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 71 - 152
Target Start/End: Original strand, 21260 - 21340
Alignment:
| Q |
71 |
tcgtacaatgctggctccatgcccactaactataaataaatgaaacatttttcttgcagaaaaaacaaatgatacttataca |
152 |
Q |
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| T |
21260 |
tcgtacaattctgagtccatgcccactaactataaataaatgaaacatttttcttgca-aaaaaaaaaattatacttataca |
21340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 203 - 315
Target Start/End: Original strand, 31897285 - 31897397
Alignment:
| Q |
203 |
gttcgtttcaaagtggatggtatttttctcgcgtcactgccgaaagatagaggaaatggaagaatatttgcgagaaaaattaagaaaaaatgatgaccaa |
302 |
Q |
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|
||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||| || |
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| T |
31897285 |
gttcgtttcaaagtggatggtgtttttctcgcgttactgccgaaagatagaggaaatggaagaattattgcgagagaaattaagaaaaagtgatgaggaa |
31897384 |
T |
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| Q |
303 |
atgggctacaatg |
315 |
Q |
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||||||||||||| |
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| T |
31897385 |
atgggctacaatg |
31897397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 71 - 164
Target Start/End: Original strand, 31897153 - 31897246
Alignment:
| Q |
71 |
tcgtacaatgctggctccatgcccactaactataaataaatgaaacatttttcttgcagaaaaaacaaatgatacttatacactgtctaattaa |
164 |
Q |
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||||||||| ||| || ||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||| ||| ||||||| |
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| T |
31897153 |
tcgtacaattctgtcttcatgcccactaactagaaataaatgaaacatttttcttgcagaaaaaaaaaattatacttatacattgtttaattaa |
31897246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0214 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0214
Description:
Target: scaffold0214; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 203 - 267
Target Start/End: Complemental strand, 3757 - 3693
Alignment:
| Q |
203 |
gttcgtttcaaagtggatggtatttttctcgcgtcactgccgaaagatagaggaaatggaagaat |
267 |
Q |
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|||| |||||| ||||||||| |||||| ||||||||||| |||||||| ||||||||||||||| |
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| T |
3757 |
gttcatttcaaggtggatggtgtttttcacgcgtcactgctgaaagataaaggaaatggaagaat |
3693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0214; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 203 - 267
Target Start/End: Complemental strand, 23922 - 23858
Alignment:
| Q |
203 |
gttcgtttcaaagtggatggtatttttctcgcgtcactgccgaaagatagaggaaatggaagaat |
267 |
Q |
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|||| |||||| ||||||||| |||||| ||||||||||| |||||||| ||||||||||||||| |
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| T |
23922 |
gttcatttcaaggtggatggtgtttttcccgcgtcactgctgaaagataaaggaaatggaagaat |
23858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 267
Target Start/End: Original strand, 30255 - 30319
Alignment:
| Q |
203 |
gttcgtttcaaagtggatggtatttttctcgcgtcactgccgaaagatagaggaaatggaagaat |
267 |
Q |
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|||| |||||| ||||||||| |||||| |||||||| | |||||||| ||||||||||||||| |
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| T |
30255 |
gttcatttcaaggtggatggtgtttttcatgcgtcacttctgaaagataaaggaaatggaagaat |
30319 |
T |
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