View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14576_low_13 (Length: 242)
Name: NF14576_low_13
Description: NF14576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14576_low_13 |
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| [»] chr6 (4 HSPs) |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 114; Significance: 6e-58; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 38 - 242
Target Start/End: Original strand, 2979812 - 2980018
Alignment:
| Q |
38 |
tgccaaataaaagcgcaacttgattgtgttgtattgttgtttgaatactttctg---gtttaataattatttttagaagagatgtgcaatatttttgtgg |
134 |
Q |
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| T |
2979812 |
tgccaaataaaaaagcaactttatcatgttgcattgttgtt-gaatattttctgcaggtttaacaattatttttggaagagatgtactatatttttgttg |
2979910 |
T |
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| Q |
135 |
aatattttctggtattatcattggtttcgaaaaggttgaaaaacaatttccgtgtaatattttatacccatgaaagatataaaaatattacaaccaatta |
234 |
Q |
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| T |
2979911 |
aatgttttccggtatcatcattggtttcgaaaaggttgaaaaacggtttccgtgtaatattttatacccaagaaagatataaaaatattacaaccaatta |
2980010 |
T |
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| Q |
235 |
attcatat |
242 |
Q |
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|||||||| |
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| T |
2980011 |
attcatat |
2980018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 142 - 242
Target Start/End: Original strand, 2983798 - 2983898
Alignment:
| Q |
142 |
tctggtattatcattggtttcgaaaaggttgaaaaacaatttccgtgtaatattttatacccatgaaagatataaaaatattacaaccaattaattcata |
241 |
Q |
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| T |
2983798 |
tctggtattatcgttggtttcgaaaaggttgaaaaacaatttccgtgtaatattttatacccatgaaagatataaaaatattacaaccaattaattcata |
2983897 |
T |
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| Q |
242 |
t |
242 |
Q |
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| T |
2983898 |
t |
2983898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 188 - 242
Target Start/End: Original strand, 2936984 - 2937037
Alignment:
| Q |
188 |
gtaatattttatacccatgaaagatataaaaatattacaaccaattaattcatat |
242 |
Q |
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| T |
2936984 |
gtaatattttatacccaagaaagatataaaattatt-caaccaattaatgcatat |
2937037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 230
Target Start/End: Complemental strand, 2657422 - 2657381
Alignment:
| Q |
189 |
taatattttatacccatgaaagatataaaaatattacaacca |
230 |
Q |
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| T |
2657422 |
taatattttatacccaagaaagatataaaattattagaacca |
2657381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 242
Target Start/End: Complemental strand, 33447 - 33405
Alignment:
| Q |
200 |
acccatgaaagatataaaaatattacaaccaattaattcatat |
242 |
Q |
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| T |
33447 |
acccaagaaagatataaaaatattacaaccaattaatgcatat |
33405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 178
Target Start/End: Original strand, 3346367 - 3346400
Alignment:
| Q |
145 |
ggtattatcattggtttcgaaaaggttgaaaaac |
178 |
Q |
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| T |
3346367 |
ggtataatcattggtttcgaaaaggttgaaaaac |
3346400 |
T |
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