View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14576_low_17 (Length: 209)
Name: NF14576_low_17
Description: NF14576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14576_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 10 - 195
Target Start/End: Original strand, 21085310 - 21085499
Alignment:
| Q |
10 |
aaaatgagacgacgtttttgtttactaaaatgacgtatatcgtgagacggagaa----tgattttcaacattagtcaaacttacatagagggaagtaata |
105 |
Q |
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| T |
21085310 |
aaaatgagacgacgtttttgtttactaaaatgacgtatatcgtgagacggagaagtggtgattttcaacattagtcaaactcacatagagagaagtaata |
21085409 |
T |
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| Q |
106 |
actccagcagtatagccaggatgaagcttaattgcagcaccaaagtatccagatttataagaatgaagtgacttgaatccactacctatg |
195 |
Q |
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| T |
21085410 |
actccagcagtatagccaggatgaagcttaattgcagcaccaaagtatccggatttataagaatgaagtgacttgaatccactacctatg |
21085499 |
T |
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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 188
Target Start/End: Complemental strand, 40870881 - 40870799
Alignment:
| Q |
106 |
actccagcagtatagccaggatgaagcttaattgcagcaccaaagtatccagatttataagaatgaagtgacttgaatccact |
188 |
Q |
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| T |
40870881 |
actcctgcagtataacctggttgaagcttaaccgcagtaccaaaatatccagatttataagagtgatatgacttgaatccact |
40870799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 85 - 159
Target Start/End: Complemental strand, 41268813 - 41268739
Alignment:
| Q |
85 |
cttacatagagggaagtaataactccagcagtatagccaggatgaagcttaattgcagcaccaaagtatccagat |
159 |
Q |
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| T |
41268813 |
cttacatagaaagatgttataactcctgcagtataaccaggttgaagcttaatggaagcaccaaagtagccagat |
41268739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 155
Target Start/End: Original strand, 27685788 - 27685840
Alignment:
| Q |
103 |
ataactccagcagtatagccaggatgaagcttaattgcagcaccaaagtatcc |
155 |
Q |
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|||||||| ||||| |||||||||||||||||||| | ||| ||||||||||| |
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| T |
27685788 |
ataactcctgcagtgtagccaggatgaagcttaatcgaagcgccaaagtatcc |
27685840 |
T |
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