View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14576_low_4 (Length: 471)
Name: NF14576_low_4
Description: NF14576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14576_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 13 - 454
Target Start/End: Complemental strand, 55374831 - 55374387
Alignment:
| Q |
13 |
aatatatacttatgtaagttgataagttttcataaacgaattaaagttaatctaaactaggctccattgtaacttctagcataattgacaaatttgttaa |
112 |
Q |
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| T |
55374831 |
aatatatacttatgtaagttgataagttttcataaacgaattaaagttaatctaaattaggctccattgtaacttctagcataattgacaaattagttaa |
55374732 |
T |
|
| Q |
113 |
atatttagaactaaattctaattttacttagcttttgacttaaatataagttattatattgaatccaagcatgacaatttcacaagacgtgcttgtccta |
212 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
55374731 |
atatttaaaactaaattctaattttacttagcttttgacttaaatataagttattatattgaatccaagcatgagaatttcacaagacgtgcttgtccta |
55374632 |
T |
|
| Q |
213 |
cttaaaagccgtccaaatatatagatttctgaggagctttctattgtaaacactaattaacttcctatgtccattgaatcatcatcattttattctaata |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55374631 |
cttaaaagccgtccaaatatatagatttctgaggagctttctattgtaaacactaattaacttcctatgtccattgaatcatcatcattttattctaata |
55374532 |
T |
|
| Q |
313 |
acacaacacttt---nnnnnnnnnnntggaagtataacttttgtatcaaagtttaagaaattgtatagtaagtcaactaaccaagctcgtgcaaccacgt |
409 |
Q |
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||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55374531 |
acacaccactttaaaaaaaaataaaatggaagtataacttttgtatcaaagtttaagaaattgtatagtaagtcaactaaccaagctcgtgcaaccacgt |
55374432 |
T |
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| Q |
410 |
ttaatgttaactaaactcaaaaaatgtttaagtcaagctcctaaa |
454 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55374431 |
ttaatgttaactaaactcaaaaaatgtttaagtcaagctcctaaa |
55374387 |
T |
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