View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14576_low_5 (Length: 462)
Name: NF14576_low_5
Description: NF14576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14576_low_5 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 19 - 462
Target Start/End: Original strand, 6685534 - 6685977
Alignment:
| Q |
19 |
atatactgatcaacaacaacttcatgtttgaggattggaggtaaccctctgccatccataatagaaccaactcgttcttttcgatttcataacacttggg |
118 |
Q |
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| T |
6685534 |
atatactaatcaacaacaacttcatgtttgaggattggaggtaaccctctgccatccataatagaatcaactcgttcttttcgatttcataacacttggg |
6685633 |
T |
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| Q |
119 |
attcaaagagcaataggcgaaacattgcttcaatgggtgcgaaaggtcttggtaactccgtcttagagaggacatgatacaattcttctcttcacccata |
218 |
Q |
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| T |
6685634 |
attcaaagagcaataggcgaaacattgcttcaatgggtgcgaaaggtcttggtaactccgtcttagagaggacatgatacaattcttctcttcacccata |
6685733 |
T |
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| Q |
219 |
ctccagatgtctcttccttcacaggcatgaacacaagcatgaacccatactgcagttttgattgctagcggtgttttggaaaaaggttgcagcattttaa |
318 |
Q |
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| T |
6685734 |
ctccagatgtctcttccttcacaagcatgaacacaagcataaacccatactgcagttttgattgctagcggtgttttggaaaaaggttgcagcattttaa |
6685833 |
T |
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| Q |
319 |
ggtgtctttattgtaactgtctatagacggcaatgccaacttcttcaacaagctaaaggaatcttcataacttaatcccttcaaatgaaatagagagttg |
418 |
Q |
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||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6685834 |
ggtgtctttctcgtaactgtctatagacggcaatgccaacttcttcaacaagctaaaggaatcttcataacttaatcccttcaaatgaaatagagagttg |
6685933 |
T |
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| Q |
419 |
actccaatttcctcggccacaattctacaacgagttgtcaatag |
462 |
Q |
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| T |
6685934 |
actccaatttcctcggccacaattctacaacgagttgtcaatag |
6685977 |
T |
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