View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14576_low_6 (Length: 437)
Name: NF14576_low_6
Description: NF14576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14576_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 367; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Complemental strand, 9608228 - 9607810
Alignment:
| Q |
1 |
taagagcctcaaattgatctaattaacatggcatatataagaagttcatgtgctagtttcttcaaattgatccaattgattaatatgaagcttcaaaagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||| || | || | |
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| T |
9608228 |
taagagcctcaaattgatctaattaacatggcatgta--agaagttcatgtgctagtttcttcaaattgatccaattgatta-tatgaagatttagaatg |
9608132 |
T |
|
| Q |
101 |
gagtgtatatttgcatctgactcaaaatatgctcaaagttatcagttgttttctcaatagggtgagtatgcactccttcatatgttgtcacaactactcc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
9608131 |
gagtgtatatttgcatctgactcaaaatatgctcaaagttatcagttgttttctcaatagggtgagtatgcactccttcatatgttgtcaccacaactcc |
9608032 |
T |
|
| Q |
201 |
ctcatctttggttaaccgttgcacttgtttctttacattgcacccttgatgtgtgcacctatagtagctcctgcaaaatattaacaaaaccaatggaatc |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9608031 |
ctcatctttggttaaccgttgcacttgtttctttacattgcacccttgatgtgtgcacctatagtagctcctgcaaaatattaacaaaaccaatggaatc |
9607932 |
T |
|
| Q |
301 |
aatatatttgttaatatcatgtatactttaaaactttaaaaccctattttaaaccctattagacattttgtatatctatatcaactacaattggtcatta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
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| T |
9607931 |
aatatatttgttaatatcatgtatactttaaaactttaaaaccctattttaaaccctatttgacattttgtatatctatatcaactacgattggtcatta |
9607832 |
T |
|
| Q |
401 |
tgaaccattatgaaatcttcat |
422 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
9607831 |
tgaaccattatgaaatcttcat |
9607810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Complemental strand, 9835799 - 9835381
Alignment:
| Q |
1 |
taagagcctcaaattgatctaattaacatggcatatataagaagttcatgtgctagtttcttcaaattgatccaattgattaatatgaagcttcaaaagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||| || | || | |
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|
| T |
9835799 |
taagagcctcaaattgatctaattaacatggcatgta--agaagttcatgtgctagtttcttcaaattgatccaattgatta-tatgaagatttagaatg |
9835703 |
T |
|
| Q |
101 |
gagtgtatatttgcatctgactcaaaatatgctcaaagttatcagttgttttctcaatagggtgagtatgcactccttcatatgttgtcacaactactcc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
9835702 |
gagtgtatatttgcatctgactcaaaatatgctcaaagttatcagttgttttctcaatagggtgagtatgcactccttcatatgttgtcaccacaactcc |
9835603 |
T |
|
| Q |
201 |
ctcatctttggttaaccgttgcacttgtttctttacattgcacccttgatgtgtgcacctatagtagctcctgcaaaatattaacaaaaccaatggaatc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9835602 |
ctcatctttggttaaccgttgcacttgtttctttacattgcacccttgatgtgtgcacctatagtagctcctgcaaaatattaacaaaaccaatggaatc |
9835503 |
T |
|
| Q |
301 |
aatatatttgttaatatcatgtatactttaaaactttaaaaccctattttaaaccctattagacattttgtatatctatatcaactacaattggtcatta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
9835502 |
aatatatttgttaatatcatgtatactttaaaactttaaaaccctattttaaaccctatttgacattttgtatatctatatcaactacgattggtcatta |
9835403 |
T |
|
| Q |
401 |
tgaaccattatgaaatcttcat |
422 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
9835402 |
tgaaccattatgaaatcttcat |
9835381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 345 - 404
Target Start/End: Complemental strand, 9607733 - 9607672
Alignment:
| Q |
345 |
tattttaaacccta--ttagacattttgtatatctatatcaactacaattggtcattatgaa |
404 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||| |||||| ||||||||||||||| |
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|
| T |
9607733 |
tattttaaaccctaaatttgacattttgtatatctatataaactacgattggtcattatgaa |
9607672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 345 - 404
Target Start/End: Complemental strand, 9835304 - 9835243
Alignment:
| Q |
345 |
tattttaaacccta--ttagacattttgtatatctatatcaactacaattggtcattatgaa |
404 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||| |||||| ||||||||||||||| |
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|
| T |
9835304 |
tattttaaaccctaaatttgacattttgtatatctatataaactacgattggtcattatgaa |
9835243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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