View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14576_low_7 (Length: 373)
Name: NF14576_low_7
Description: NF14576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14576_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 32824666 - 32825041
Alignment:
| Q |
1 |
tatatatataaaggacccaacaaaaacacaaacacactcgctatcatttttc----aataggggatgggaaccacaaacaaagaaactaaacctcttctt |
96 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32824666 |
tatatatataaaggacccaacaaaaacacaaacacactcgctataatttttcgatagataggggatgggaaccacaaacaaagaaactaaacctcttctt |
32824765 |
T |
|
| Q |
97 |
gacatgaaggtgacaatccacaaaacttcaatgatttttccatcaaaacaaaccgagaacaaatccatgttcttatcaaatatagacaaggtactcaatt |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32824766 |
gacatgaaggtgacaatccacaaaacttcaatgatttttccatcaaaacaaaccgagaacaaatccatgttcttatcaaatatagacaaggtactcaatt |
32824865 |
T |
|
| Q |
197 |
tctacgtaaaaacggttcatttcttcgaagcaaacaaagattttcctcctcaaatagtgaccgagaagttaaagaaagctttagaagatgctctagtagc |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32824866 |
tctacgtaaaaacggttcatttcttcgaagcaaacaaagattttcctcctcaaatagtgaccgagaagttaaagaaagctttagaagatgctctagtagc |
32824965 |
T |
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| Q |
297 |
ttatgacttccttgctggaagattaaagatgaacactgaaaccaacaggttggagatagattgcaatgcagaaggt |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32824966 |
ttatgacttccttgctggaagattaaagatgaacactgaaaccaacaggttggagatagattgcaatgcagaaggt |
32825041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 97 - 372
Target Start/End: Original strand, 32808071 - 32808346
Alignment:
| Q |
97 |
gacatgaaggtgacaatccacaaaacttcaatgatttttccatcaaaacaaaccgagaacaaatccatgttcttatcaaatatagacaaggtactcaatt |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| || |||||| ||||||||||||| ||||||| || ||||||| |
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| T |
32808071 |
gacatgaaggtgacaatccacaaaacttcaatgattttcccatcaaaacaaatcgaaaagaaatccttgttcttatcaaacatagacagagttctcaatt |
32808170 |
T |
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| Q |
197 |
tctacgtaaaaacggttcatttcttcgaagcaaacaaagattttcctcctcaaatagtgaccgagaagttaaagaaagctttagaagatgctctagtagc |
296 |
Q |
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| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32808171 |
ttcatgtgaaaacggttcatttcttcgaagcaaacaaagattttcctcctcaaatagtgaccgagaagttaaagaaagctttagaagatgctctagtagc |
32808270 |
T |
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| Q |
297 |
ttatgacttccttgctggaagattaaagatgaacactgaaaccaacaggttggagatagattgcaatgcagaaggt |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32808271 |
ttatgacttccttgctggaagattaaagatgaacactgaaaccaacaggttggagatagattgcaatgcagaaggt |
32808346 |
T |
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