View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14577_high_3 (Length: 543)
Name: NF14577_high_3
Description: NF14577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14577_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 507; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 1 - 527
Target Start/End: Complemental strand, 42808656 - 42808130
Alignment:
| Q |
1 |
agggataggaaaccatacttagccatgccttcagaaagaacaacaaaagtattagcaataccaaacataatcctccaaagaatagcacaaagaacaaccc |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42808656 |
agggataagaaaccatacttagccatgccttcagaaagaacaacaaaagtattagcaataccaaacataatcctccaaagaatagcacaaagaacaaccc |
42808557 |
T |
|
| Q |
101 |
cagcagcaccaaacagaaaaaggttattccttttgaagaaagcctcaagttgcaaaaccatggcctcacggtaccgcgtgaaagcagaggtgaccgcagc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42808556 |
cagcagcaccaaacagaaaaaggttattccttttgaagaaagcctcaagttgcaaaaccatggcctcacggtaccgcgtgaaagcagaggtgaccgcaga |
42808457 |
T |
|
| Q |
201 |
cgtaggtttctccagaaccttcttggccttgaaaccgaggttcagtggtggctttgaagagaagaatctgaaaacgccgatacgactgggagggtgcaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42808456 |
cgtaggtttctccagaaccttcttggccttgaaaccgaggttcagtggtggctttgaagagaagaatctgaaaacgccgatacgactgggagggtgcaaa |
42808357 |
T |
|
| Q |
301 |
attgggggtgaatggaggaaggaagagaggatggatttagggtggggtgtggatagtaattttgaagactggtgaagtggtggagggggtgcggaaatga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
42808356 |
attgggggtgaatggaggaaggaagagaggatggatttagggtggggtgtggatagtaattttgaagagtggtgaagtggtggagggggtgcggaaatga |
42808257 |
T |
|
| Q |
401 |
aagggtggcggaggaagagctggtgaagttgggtgattcgttgtgaacaaccaccgcattttgttcttgacatttgcatttccgatctgtgatagaactc |
500 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42808256 |
aagggtggcggaggaagaattggtgaagttgggtgattcgttgtgaacaaccaccgcattttgttcttgacatttgcatttccgatctgtgatagaactc |
42808157 |
T |
|
| Q |
501 |
gccggtgattgaaataacggtcgggtc |
527 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
42808156 |
gccggtgattgaaataacggtcgggtc |
42808130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 428 - 488
Target Start/End: Complemental strand, 25184136 - 25184076
Alignment:
| Q |
428 |
gttgggtgattcgttgtgaacaaccaccgcattttgttcttgacatttgcatttccgatct |
488 |
Q |
| |
|
|||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
25184136 |
gttgggtgattctttgtgaacaacaatcgcattttgttcttgacatttgcatttccgatct |
25184076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University