View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14577_low_13 (Length: 266)
Name: NF14577_low_13
Description: NF14577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14577_low_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 9 - 218
Target Start/End: Complemental strand, 48231559 - 48231350
Alignment:
| Q |
9 |
agtgagatgaaagaaacaacaagagtgaagtcaacatcgacaatttgcatgatagtagtacacctcaaaataactatgaaatttctctattttcattttc |
108 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48231559 |
agtgaaatgaaagaaacaacaagagagaagtcaacattgacaatttgcatgatagtagtacacctcaaaataactatgaaatttctctattttcattttc |
48231460 |
T |
|
| Q |
109 |
tgaaacaaaattcaaaataaacaaaccctacacagctggtatcattcttataatgctattttctttaacgacaaatcaaatactcctatagaaagaaact |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48231459 |
tgaaacaaaattcaaaataaacaaaccctacacagctggtatcattcttataatgctattttctttaacgacaaatcaaatactcctatagaaagaaact |
48231360 |
T |
|
| Q |
209 |
gagtacaaat |
218 |
Q |
| |
|
|||||||||| |
|
|
| T |
48231359 |
gagtacaaat |
48231350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University