View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14577_low_16 (Length: 219)

Name: NF14577_low_16
Description: NF14577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14577_low_16
NF14577_low_16
[»] chr2 (15 HSPs)
chr2 (1-140)||(59832-59971)
chr2 (9-138)||(14001457-14001586)
chr2 (1-101)||(4415207-4415307)
chr2 (1-136)||(39282803-39282938)
chr2 (1-135)||(15806112-15806246)
chr2 (46-135)||(25757381-25757470)
chr2 (46-136)||(4416992-4417082)
chr2 (46-135)||(62855-62944)
chr2 (13-135)||(15807921-15808043)
chr2 (1-135)||(32607179-32607313)
chr2 (27-135)||(40099226-40099334)
chr2 (13-135)||(32608069-32608191)
chr2 (1-130)||(859982-860111)
chr2 (46-114)||(40097569-40097637)
chr2 (46-135)||(39280386-39280475)
[»] chr3 (8 HSPs)
chr3 (1-135)||(41625308-41625442)
chr3 (6-135)||(54094125-54094254)
chr3 (1-135)||(5127404-5127538)
chr3 (1-135)||(5134659-5134793)
chr3 (46-135)||(54092686-54092775)
chr3 (46-140)||(5132991-5133085)
chr3 (66-135)||(41623652-41623721)
chr3 (66-136)||(5125800-5125870)
[»] chr6 (4 HSPs)
chr6 (4-140)||(25170292-25170428)
chr6 (46-137)||(25172144-25172235)
chr6 (13-135)||(11163800-11163922)
chr6 (1-37)||(11165312-11165348)
[»] chr4 (8 HSPs)
chr4 (1-135)||(44974056-44974190)
chr4 (1-112)||(50133060-50133166)
chr4 (1-124)||(9590312-9590435)
chr4 (45-135)||(50131162-50131252)
chr4 (1-136)||(37474143-37474277)
chr4 (47-135)||(27382117-27382205)
chr4 (13-135)||(37481031-37481153)
chr4 (42-135)||(26296925-26297018)
[»] chr7 (11 HSPs)
chr7 (1-135)||(25971680-25971814)
chr7 (1-132)||(6058427-6058558)
chr7 (1-135)||(46866465-46866599)
chr7 (1-135)||(23966057-23966191)
chr7 (1-135)||(31915028-31915162)
chr7 (47-135)||(31913469-31913557)
chr7 (1-112)||(43009631-43009742)
chr7 (46-135)||(6056766-6056855)
chr7 (66-135)||(17198928-17198997)
chr7 (66-114)||(46867989-46868037)
chr7 (46-140)||(23962299-23962393)
[»] chr1 (4 HSPs)
chr1 (1-135)||(43870271-43870405)
chr1 (1-140)||(51546282-51546420)
chr1 (27-135)||(51544135-51544243)
chr1 (66-134)||(43868615-43868683)
[»] chr8 (5 HSPs)
chr8 (1-132)||(44528130-44528261)
chr8 (46-140)||(37801461-37801555)
chr8 (1-135)||(37803618-37803752)
chr8 (46-135)||(15145797-15145886)
chr8 (2-112)||(15142983-15143092)
[»] scaffold0092 (2 HSPs)
scaffold0092 (1-140)||(34594-34733)
scaffold0092 (13-135)||(36852-36974)
[»] scaffold0129 (2 HSPs)
scaffold0129 (1-112)||(6016-6127)
scaffold0129 (47-135)||(4459-4547)
[»] scaffold0204 (1 HSPs)
scaffold0204 (1-135)||(28341-28475)


Alignment Details
Target: chr2 (Bit Score: 96; Significance: 3e-47; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 59971 - 59832
Alignment:
Q  1 taacgccccaaatggacgtagggattaatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgatt 100  Q
    ||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||    
T  59971 taacgtcccaaatggacgtagggactaaattgattgagatatgacaaattcagggacaaagcgtgcatttcgatgaattgagggatgtttttgtctgatt 59872  T
Q  101 cgtgcaaattcaggaatgaatttggatattcactcgaaaa 140  Q
    |||||||||||||| |  ||||||| ||||||||| ||||    
T  59871 cgtgcaaattcagggacaaatttgggtattcactcaaaaa 59832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 9 - 138
Target Start/End: Original strand, 14001457 - 14001586
Alignment:
Q  9 caaatggacgtagggattaatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgattcgtgcaaa 108  Q
    |||||||||||||| | ||| ||||||||||||||||||||| ||||| ||||  | ||||||||| |||||||||| ||||||||||||||| ||||||    
T  14001457 caaatggacgtaggaactaacttgattgagatatgacaaatttagggataaagtgtgcatttcgataaattgggggacgtttttgtctgattcatgcaaa 14001556  T
Q  109 ttcaggaatgaatttggatattcactcgaa 138  Q
    |||| | | | |||||| ||||||||||||    
T  14001557 ttcatggacggatttgggtattcactcgaa 14001586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 4415307 - 4415207
Alignment:
Q  1 taacgccccaaatggacgtagggattaatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgatt 100  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||||||||| | ||||| | ||||| ||| ||||||||||||||||||| |||||    
T  4415307 taacgccccaaatggacgtagggactaatttgattgaaatatgacaaattcaggaataaagcgtgcattttgataaattgggggatgtttttgtttgatt 4415208  T
Q  101 c 101  Q
    |    
T  4415207 c 4415207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 39282803 - 39282938
Alignment:
Q  1 taacgccccaaatggacgtagggattaatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgatt 100  Q
    |||||||||||||||||||||||| ||||||||||||  | ||  |||||||||||  |||| | ||||||||  |||||||||| ||||||| | ||||    
T  39282803 taacgccccaaatggacgtagggactaatttgattgacgtttgttaaattcagggattaagcgtgcatttcgactaattgggggacgtttttggccgatt 39282902  T
Q  101 cgtgcaaattcaggaatgaatttggatattcactcg 136  Q
    |||||||||||||| | |||||||| ||||||||||    
T  39282903 cgtgcaaattcagggaagaatttgggtattcactcg 39282938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 15806246 - 15806112
Alignment:
Q  1 taacgccccaaatggacgtagggattaatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgatt 100  Q
    |||||||||||||||||||||||| ||||||||||||  | ||  |||||||||||| |||| | ||||||||  ||||||||||  |||||| | ||||    
T  15806246 taacgccccaaatggacgtagggactaatttgattgacgtttgttaaattcagggactaagcgtgcatttcgactaattgggggacatttttggccgatt 15806147  T
Q  101 cgtgcaaattcaggaatgaatttggatattcactc 135  Q
    ||||||||| |||| | |||||||| |||||||||    
T  15806146 cgtgcaaatccagggacgaatttgggtattcactc 15806112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 46 - 135
Target Start/End: Complemental strand, 25757470 - 25757381
Alignment:
Q  46 aaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgattcgtgcaaattcaggaatgaatttggatattcactc 135  Q
    ||||||||||||||||  | ||||||||| ||||||||||  ||||||||||||||||||||||||||| | |||||||| |||||||||    
T  25757470 aaattcagggacaaagtgtgcatttcgataaattgggggacatttttgtctgattcgtgcaaattcagggacgaatttgggtattcactc 25757381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 46 - 136
Target Start/End: Original strand, 4416992 - 4417082
Alignment:
Q  46 aaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgattcgtgcaaattcaggaatgaatttggatattcactcg 136  Q
    ||||||||||||||| | | |||||||||||||||||||| ||||||||  |||||||| ||||||||| |  ||||||| ||||||||||    
T  4416992 aaattcagggacaaaacgtgcatttcgatgaattgggggacgtttttgttcgattcgtgaaaattcagggacaaatttgggtattcactcg 4417082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 46 - 135
Target Start/End: Original strand, 62855 - 62944
Alignment:
Q  46 aaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgattcgtgcaaattcaggaatgaatttggatattcactc 135  Q
    ||||||||||||||||| | ||||||||| ||||||||||  |||||||| |||||||| |||| |||| | |||||||| |||||||||    
T  62855 aaattcagggacaaagcgtgcatttcgattaattgggggacatttttgtcggattcgtgaaaatccagggacgaatttgggtattcactc 62944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 135
Target Start/End: Original strand, 15807921 - 15808043
Alignment:
Q  13 tggacgtagggattaatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgattcgtgcaaattca 112  Q
    |||||| | ||| ||||||||||||  | ||  |||||||||||| |||| | ||||||||  |||||||||| ||||||| | ||||||||||||| ||    
T  15807921 tggacggaaggactaatttgattgacgtttgttaaattcagggactaagcgtgcatttcgactaattgggggacgtttttggccgattcgtgcaaatcca 15808020  T
Q  113 ggaatgaatttggatattcactc 135  Q
    || | |||||||| |||||||||    
T  15808021 gggacgaatttgggtattcactc 15808043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 32607313 - 32607179
Alignment:
Q  1 taacgccccaaatggacgtagggattaatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgatt 100  Q
    ||||||| |||||||||||||||| ||||||||||||  | ||  ||||| |||||| |||| | ||||||||  ||||||| || ||||||| | ||||    
T  32607313 taacgcctcaaatggacgtagggactaatttgattgacgtttgttaaatttagggactaagcgtgcatttcgactaattgggagacgtttttggccgatt 32607214  T
Q  101 cgtgcaaattcaggaatgaatttggatattcactc 135  Q
    ||||||||| |||| |  ||||||  |||||||||    
T  32607213 cgtgcaaatccagggacaaatttgagtattcactc 32607179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 135
Target Start/End: Original strand, 40099226 - 40099334
Alignment:
Q  27 aatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgattcgtgcaaattcaggaatgaatttgga 126  Q
    |||||||||||||||||||||||| || |||||||| | || ||||||  || ||  ||| |||||||| ||||| |||||||||||| | |||||||      
T  40099226 aatttgattgagatatgacaaatttagcgacaaagcgtgcaattcgatacatcggatgatatttttgtccgattcatgcaaattcagggacgaatttgag 40099325  T
Q  127 tattcactc 135  Q
    |||||||||    
T  40099326 tattcactc 40099334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 13 - 135
Target Start/End: Original strand, 32608069 - 32608191
Alignment:
Q  13 tggacgtagggattaatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgattcgtgcaaattca 112  Q
    |||||| | ||| ||||||||||||  | ||  |||||||||||| |||| | ||||||||  |||||||||| ||||||| | |||||||| |||| ||    
T  32608069 tggacggaaggactaatttgattgacgtttgttaaattcagggactaagcgtgcatttcgactaattgggggacgtttttggccgattcgtgtaaatcca 32608168  T
Q  113 ggaatgaatttggatattcactc 135  Q
    || |  ||||||| |||||||||    
T  32608169 gggacaaatttgggtattcactc 32608191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 860111 - 859982
Alignment:
Q  1 taacgccccaaatggacgtagggattaatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgatt 100  Q
    ||||| |||||||||||||| | | || |||||||||  | ||  |||||||||||  ||  || ||||||||| |||||  |||||||||| || ||||    
T  860111 taacgtcccaaatggacgtatgaactattttgattgacgtttgttaaattcagggatgaaatatgcatttcgattaattgaaggatgtttttatccgatt 860012  T
Q  101 cgtgcaaattcaggaatgaatttggatatt 130  Q
    |||  ||||||||||| | |||||||||||    
T  860011 cgtaaaaattcaggaacggatttggatatt 859982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 114
Target Start/End: Complemental strand, 40097637 - 40097569
Alignment:
Q  46 aaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgattcgtgcaaattcagg 114  Q
    ||||||||| ||||||| | ||||||||| |||| |||||  |||||| | ||||||||||||||||||    
T  40097637 aaattcaggaacaaagcgtgcatttcgataaatttggggacatttttgcccgattcgtgcaaattcagg 40097569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 135
Target Start/End: Complemental strand, 39280475 - 39280386
Alignment:
Q  46 aaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgattcgtgcaaattcaggaatgaatttggatattcactc 135  Q
    |||||||||||| |||| | ||||||||  |||| ||||| ||||||| | ||||||| ||||| |||  | |||||||| |||||||||    
T  39280475 aaattcagggactaagcgtgcatttcgactaattaggggacgtttttggccgattcgtacaaatccagagacgaatttgggtattcactc 39280386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 41625308 - 41625442
Alignment:
Q  1 taacgccccaaatggacgtagggattaatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgatt 100  Q
    |||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||  | | ||||||| ||||||||||  |||||||| ||||    
T  41625308 taacaccccaaatggatgtagggactaatttgattgagatatgacaaattcagggacaaagtgtgcgtttcgataaattgggggacatttttgtccgatt 41625407  T
Q  101 cgtgcaaattcaggaatgaatttggatattcactc 135  Q
    |||||||||||||| | ||||||||||||||||||    
T  41625408 cgtgcaaattcagggacgaatttggatattcactc 41625442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 6 - 135
Target Start/End: Original strand, 54094125 - 54094254
Alignment:
Q  6 ccccaaatggacgtagggattaatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgattcgtgc 105  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||| |||||   ||||||||||||||||| ||||    
T  54094125 ccccaaatggacgtagggactaatttgattgagatatgacaaattcagggacaaagcgtgcatttcgataaattgaaagatgtttttgtctgatttgtgc 54094224  T
Q  106 aaattcaggaatgaatttggatattcactc 135  Q
    ||||||| | |||||||||  |||||||||    
T  54094225 aaattcaaggatgaatttgagtattcactc 54094254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 5127404 - 5127538
Alignment:
Q  1 taacgccccaaatggacgtagggattaatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgatt 100  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||  | ||||||||| |||||| ||| ||||||||| ||||    
T  5127404 taacgccccaaatggacgtaaggactaatttgattgagatatgacaaattcagggataaagtgtgcatttcgataaattggaggacgtttttgtccgatt 5127503  T
Q  101 cgtgcaaattcaggaatgaatttggatattcactc 135  Q
     ||||||||||| | | |||||||| |||||||||    
T  5127504 tgtgcaaattcaaggacgaatttgggtattcactc 5127538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 5134659 - 5134793
Alignment:
Q  1 taacgccccaaatggacgtagggattaatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgatt 100  Q
    |||||||||||||||||||| ||  ||||||||| ||||||||||||||||||||| ||||  | ||||||||| |||||| ||||||||||||| ||||    
T  5134659 taacgccccaaatggacgtaaggtataatttgatggagatatgacaaattcagggataaagtgtgcatttcgataaattggaggatgtttttgtccgatt 5134758  T
Q  101 cgtgcaaattcaggaatgaatttggatattcactc 135  Q
    |||||||||||| | | |||||| | |||||||||    
T  5134759 cgtgcaaattcaaggacgaattttggtattcactc 5134793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 46 - 135
Target Start/End: Complemental strand, 54092775 - 54092686
Alignment:
Q  46 aaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgattcgtgcaaattcaggaatgaatttggatattcactc 135  Q
    ||||||||||||||||| | |||||||||||||||||| ||||||||||| |||||||| ||||||||| | |||||||| |||||||||    
T  54092775 aaattcagggacaaagcgtgcatttcgatgaattggggaatgtttttgtccgattcgtgaaaattcagggacgaatttgggtattcactc 54092686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 140
Target Start/End: Complemental strand, 5133085 - 5132991
Alignment:
Q  46 aaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgattcgtgcaaattcaggaatgaatttggatattcactcgaaaa 140  Q
    ||||||| |||||||  || ||||||||| |||||| ||| ||||||||| |||||||||||||||| | |  |||||||||||| |||| ||||    
T  5133085 aaattcaaggacaaaatatgcatttcgataaattggaggacgtttttgtccgattcgtgcaaattcaaggactaatttggatatttactcaaaaa 5132991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 41623721 - 41623652
Alignment:
Q  66 catttcgatgaattgggggatgtttttgtctgattcgtgcaaattcaggaatgaatttggatattcactc 135  Q
    ||||||||| |||||||| |  |||||||| |||||||||||||||||| | ||||| ||||||||||||    
T  41623721 catttcgataaattggggaacatttttgtccgattcgtgcaaattcagggacgaattgggatattcactc 41623652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 66 - 136
Target Start/End: Complemental strand, 5125870 - 5125800
Alignment:
Q  66 catttcgatgaattgggggatgtttttgtctgattcgtgcaaattcaggaatgaatttggatattcactcg 136  Q
    ||||||||| |||||| ||| ||||||||| |||||||||||||||| | |  ||||||| ||||||||||    
T  5125870 catttcgataaattggaggacgtttttgtccgattcgtgcaaattcaaggactaatttgggtattcactcg 5125800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 4 - 140
Target Start/End: Complemental strand, 25170428 - 25170292
Alignment:
Q  4 cgccccaaatggacgtagggattaatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgattcgt 103  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||  |||| ||||||||  |||||||    
T  25170428 cgccacaaatggacgtagggactaatttgattgagatatgacaaattcaaggataaagcgtacatttcgatgaattaagggacgtttttgttcgattcgt 25170329  T
Q  104 gcaaattcaggaatgaatttggatattcactcgaaaa 140  Q
    ||||||||||| | |||||||| ||||||||| ||||    
T  25170328 gcaaattcagggacgaatttgggtattcactctaaaa 25170292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 46 - 137
Target Start/End: Original strand, 25172144 - 25172235
Alignment:
Q  46 aaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgattcgtgcaaattcaggaatgaatttggatattcactcga 137  Q
    ||||||||||| ||||| | |||||||||||||||||  || | |||||| |||||||| ||||||||| | |||||||| |||||| ||||    
T  25172144 aaattcagggataaagcgtgcatttcgatgaattgggaaatatatttgtccgattcgtgaaaattcagggacgaatttgggtattcattcga 25172235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 135
Target Start/End: Complemental strand, 11163922 - 11163800
Alignment:
Q  13 tggacgtagggattaatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgattcgtgcaaattca 112  Q
    |||||| | ||| ||||||||||||  | ||  |||||||||||| |||| | ||||||||  ||||||| |||||||||| | ||||||||||||| ||    
T  11163922 tggacggaaggactaatttgattgacgtttgttaaattcagggactaagcgtgcatttcgactaattgggagatgtttttggccgattcgtgcaaatcca 11163823  T
Q  113 ggaatgaatttggatattcactc 135  Q
     | | |||||||| |||||||||    
T  11163822 aggacgaatttgggtattcactc 11163800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 11165312 - 11165348
Alignment:
Q  1 taacgccccaaatggacgtagggattaatttgattga 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  11165312 taacgccccaaatggacgtagggactaatttgattga 11165348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 4e-37; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 44974056 - 44974190
Alignment:
Q  1 taacgccccaaatggacgtagggattaatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgatt 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||  |  |||||||| |||||| ||| ||||||||| ||||    
T  44974056 taacgccccaaatggacgtagggactaatttgattgagatatgacaaatgcagggacaaagtgtgtatttcgataaattggaggacgtttttgtccgatt 44974155  T
Q  101 cgtgcaaattcaggaatgaatttggatattcactc 135  Q
    | |||||||||||| | | ||||||||||||||||    
T  44974156 cctgcaaattcagggacggatttggatattcactc 44974190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 50133060 - 50133166
Alignment:
Q  1 taacgccccaaatggacgtagggattaatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgatt 100  Q
    |||||||||||||||||| ||||| |||||||||||||||||     ||||||||||||||| | ||||||||| |||||||||| |||||||||| |||    
T  50133060 taacgccccaaatggacgaagggactaatttgattgagatat-----attcagggacaaagcgtgcatttcgataaattgggggacgtttttgtctaatt 50133154  T
Q  101 cgtgcaaattca 112  Q
    ||||||||||||    
T  50133155 cgtgcaaattca 50133166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 9590435 - 9590312
Alignment:
Q  1 taacgccccaaatggacgtagggattaatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgatt 100  Q
    |||| ||||||||| ||| ||||| |||||||||||| ||||||||||||||   |||||  |  ||||||||| |||||| |||| |||||||| ||||    
T  9590435 taacaccccaaatgaacggagggactaatttgattgatatatgacaaattcataaacaaaatagccatttcgataaattggaggatatttttgtccgatt 9590336  T
Q  101 cgtgcaaattcaggaatgaatttg 124  Q
    |||||||||||| ||| |||||||    
T  9590335 cgtgcaaattcaagaacgaatttg 9590312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 45 - 135
Target Start/End: Complemental strand, 50131252 - 50131162
Alignment:
Q  45 caaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgattcgtgcaaattcaggaatgaatttggatattcactc 135  Q
    ||||||||||||| |||| | ||||||||| |||||||||| ||||||||| |||||||||||||||||| |  ||||||| |||||||||    
T  50131252 caaattcagggacgaagcgtgcatttcgataaattgggggacgtttttgtccgattcgtgcaaattcagggacaaatttgggtattcactc 50131162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 37474277 - 37474143
Alignment:
Q  1 taacgccccaaatggacgtagggattaatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgatt 100  Q
    |||||||||||||||||||||||| ||||||||||||  | ||  ||||||||  || |||| | || |||||  |||||||||| ||||||| | ||||    
T  37474277 taacgccccaaatggacgtagggactaatttgattgacgtttgttaaattcagaaactaagcgtgca-ttcgactaattgggggacgtttttggccgatt 37474179  T
Q  101 cgtgcaaattcaggaatgaatttggatattcactcg 136  Q
    ||||||||| |||| | |||||||  ||||||||||    
T  37474178 cgtgcaaatccagggacgaatttgtgtattcactcg 37474143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 135
Target Start/End: Complemental strand, 27382205 - 27382117
Alignment:
Q  47 aattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgattcgtgcaaattcaggaatgaatttggatattcactc 135  Q
    |||||||||||||||| | ||||| |||||||||||||| |||| |||| |||||||  ||||||||| | |||||| | |||||||||    
T  27382205 aattcagggacaaagcgtgcattttgatgaattgggggacgtttatgtccgattcgtaaaaattcagggacgaatttaggtattcactc 27382117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 135
Target Start/End: Original strand, 37481031 - 37481153
Alignment:
Q  13 tggacgtagggattaatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgattcgtgcaaattca 112  Q
    |||||| | ||| |||||||||||| || ||  |||||||||||| |||| | ||||||||| ||||| | || ||||||| | ||||||||||||| ||    
T  37481031 tggacggaaggactaatttgattgacatttgttaaattcagggactaagcgtgcatttcgattaattgtgagacgtttttggccgattcgtgcaaatcca 37481130  T
Q  113 ggaatgaatttggatattcactc 135  Q
     | | |||||||| |||||||||    
T  37481131 cggacgaatttgggtattcactc 37481153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 135
Target Start/End: Original strand, 26296925 - 26297018
Alignment:
Q  42 tgacaaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgattcgtgcaaattcaggaatgaatttggatattcactc 135  Q
    ||||||||||||||||||||  | ||||||||| | ||| || | ||||||  | ||||||| ||||||||   | ||||||||||||||||||    
T  26296925 tgacaaattcagggacaaagtgtgcatttcgataacttgaggaacgttttttgccgattcgtacaaattcaaagacgaatttggatattcactc 26297018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 25971814 - 25971680
Alignment:
Q  1 taacgccccaaatggacgtagggattaatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgatt 100  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||  | ||||| ||| ||||  |||| ||||||||| ||||    
T  25971814 taacgccccaaatagacgtagggactaatttgattgagatatgacaaattcaaggacaaagtgtgcattttgataaattatgggacgtttttgtccgatt 25971715  T
Q  101 cgtgcaaattcaggaatgaatttggatattcactc 135  Q
    |||| ||||||||| | ||||||||||||||||||    
T  25971714 cgtggaaattcagggacgaatttggatattcactc 25971680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 6058427 - 6058558
Alignment:
Q  1 taacgccccaaatggacgtagggattaatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgatt 100  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||| ||||  | ||||||||| |||||| | | |||||||||  |||    
T  6058427 taacgccccaaatggacgtaaggactaatttgattgagatatgacaaattcaaggataaagtgtgcatttcgataaattggagaacgtttttgtccaatt 6058526  T
Q  101 cgtgcaaattcaggaatgaatttggatattca 132  Q
    | |||||||||| | | |||||||||||||||    
T  6058527 catgcaaattcaaggacgaatttggatattca 6058558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 46866599 - 46866465
Alignment:
Q  1 taacgccccaaatggacgtagggattaatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgatt 100  Q
    ||||||||||||| ||| |||||| |||||||||| | |||||||||||| ||||||||||  | ||||||||| |||||| |||  |||||||| ||||    
T  46866599 taacgccccaaatagacatagggactaatttgattcaaatatgacaaatttagggacaaagtgtgcatttcgataaattggaggacatttttgtccgatt 46866500  T
Q  101 cgtgcaaattcaggaatgaatttggatattcactc 135  Q
    | |||||||||||| | |||||| |||||||||||    
T  46866499 cttgcaaattcagggacgaatttagatattcactc 46866465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 23966057 - 23966191
Alignment:
Q  1 taacgccccaaatggacgtagggattaatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgatt 100  Q
    |||||||||||||||||||||||| || ||||||||| || ||  ||||||| ||||||||  | ||||||||| |||||||||| |||||| ||||||     
T  23966057 taacgccccaaatggacgtagggactattttgattgacatttgttaaattcaaggacaaagtgtgcatttcgattaattgggggacgtttttctctgatc 23966156  T
Q  101 cgtgcaaattcaggaatgaatttggatattcactc 135  Q
    |||| |||| |||||| |||||||| |||| ||||    
T  23966157 cgtgaaaatccaggaacgaatttgggtatttactc 23966191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 31915028 - 31915162
Alignment:
Q  1 taacgccccaaatggacgtagggattaatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgatt 100  Q
    ||||| |||||||||||||||||| || |||||| ||  | ||  ||||||||||||||||| | ||||||||| |||| ||||| ||||||||| ||||    
T  31915028 taacgtcccaaatggacgtagggactattttgatggacgtttgttaaattcagggacaaagcgtgcatttcgattaattaggggacgtttttgtccgatt 31915127  T
Q  101 cgtgcaaattcaggaatgaatttggatattcactc 135  Q
    |||| |||| || ||| ||||||||||||||||||    
T  31915128 cgtgaaaatccaagaacgaatttggatattcactc 31915162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 47 - 135
Target Start/End: Complemental strand, 31913557 - 31913469
Alignment:
Q  47 aattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgattcgtgcaaattcaggaatgaatttggatattcactc 135  Q
    |||||||||||||||| | ||||||||| ||| |||||| ||||||||| |||||||| |||| |||| | ||||||||||||||||||    
T  31913557 aattcagggacaaagcgtgcatttcgattaatcgggggacgtttttgtccgattcgtgaaaatccagggacgaatttggatattcactc 31913469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 43009631 - 43009742
Alignment:
Q  1 taacgccccaaatggacgtagggattaatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgatt 100  Q
    |||| ||| ||||||||| ||| | || ||||||||| ||||||||||||| ||||||||  |  ||||||||| ||||| |||| |||||| |||||||    
T  43009631 taacaccctaaatggacgaaggaactagtttgattgacatatgacaaattcggggacaaaatagccatttcgataaattgagggacgtttttatctgatt 43009730  T
Q  101 cgtgcaaattca 112  Q
    ||||||||||||    
T  43009731 cgtgcaaattca 43009742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 46 - 135
Target Start/End: Complemental strand, 6056855 - 6056766
Alignment:
Q  46 aaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgattcgtgcaaattcaggaatgaatttggatattcactc 135  Q
    ||||||| ||||||||  | ||||||||| |||||| ||| ||||||||| |||||||||||||||||| | |||||||| |||||||||    
T  6056855 aaattcaaggacaaagtgtgcatttcgataaattggaggacgtttttgtccgattcgtgcaaattcagggacgaatttgggtattcactc 6056766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 17198997 - 17198928
Alignment:
Q  66 catttcgatgaattgggggatgtttttgtctgattcgtgcaaattcaggaatgaatttggatattcactc 135  Q
    ||||||||| |||||||||| ||||||||  |||||||||||||||||| | ||| ||| ||||||||||    
T  17198997 catttcgataaattgggggacgtttttgttcgattcgtgcaaattcagggacgaaattgaatattcactc 17198928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 114
Target Start/End: Original strand, 46867989 - 46868037
Alignment:
Q  66 catttcgatgaattgggggatgtttttgtctgattcgtgcaaattcagg 114  Q
    ||||||||| |||||| ||| ||||||||| ||||||||||||||||||    
T  46867989 catttcgataaattggaggacgtttttgtccgattcgtgcaaattcagg 46868037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 140
Target Start/End: Complemental strand, 23962393 - 23962299
Alignment:
Q  46 aaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgattcgtgcaaattcaggaatgaatttggatattcactcgaaaa 140  Q
    |||||||||||||||   | | ||||||| |||| | ||| ||||||||| |||||||| ||||  ||| | |||||||||||||||||| ||||    
T  23962393 aaattcagggacaaaatgtgcgtttcgattaatttgaggacgtttttgtccgattcgtgaaaatctagggacgaatttggatattcactcaaaaa 23962299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 6e-30; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 43870271 - 43870405
Alignment:
Q  1 taacgccccaaatggacgtagggattaatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgatt 100  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||  | ||||||||| |||||  ||| |||||| || ||||    
T  43870271 taacgccccaaatggacgtaaggactaatttgattgagatatgacaaattcagggataaagtgtgcatttcgataaattgaaggacgtttttatccgatt 43870370  T
Q  101 cgtgcaaattcaggaatgaatttggatattcactc 135  Q
    ||||||||||||   | |||||||| |||||||||    
T  43870371 cgtgcaaattcaatgacgaatttgggtattcactc 43870405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 51546282 - 51546420
Alignment:
Q  1 taacgccccaaatggacgtagggattaatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgatt 100  Q
    |||||||||||||||||||| ||| ||||||||||||  | ||  |||||||| ||| |||| | ||||||||  |||||||||| ||||||| | ||||    
T  51546282 taacgccccaaatggacgtatggactaatttgattgacgtttgttaaattcagagactaagcgtgcatttcgactaattgggggacgtttttg-ccgatt 51546380  T
Q  101 cgtgcaaattcaggaatgaatttggatattcactcgaaaa 140  Q
    ||||||||| |||| | |||||||| ||||||||| ||||    
T  51546381 cgtgcaaatccagggacgaatttgggtattcactcaaaaa 51546420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 135
Target Start/End: Complemental strand, 51544243 - 51544135
Alignment:
Q  27 aatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgattcgtgcaaattcaggaatgaatttgga 126  Q
    ||||||||||| || ||  |||||||||||| |||| | ||||||||  |||||||||| ||||||| | ||||||||||||| || | | |||||||||    
T  51544243 aatttgattgacatttgttaaattcagggactaagcgtgcatttcgactaattgggggacgtttttgaccgattcgtgcaaatccatgcacgaatttgga 51544144  T
Q  127 tattcactc 135  Q
    ||| |||||    
T  51544143 tatacactc 51544135  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 134
Target Start/End: Complemental strand, 43868683 - 43868615
Alignment:
Q  66 catttcgatgaattgggggatgtttttgtctgattcgtgcaaattcaggaatgaatttggatattcact 134  Q
    ||||||||| |||| | ||| |||||| || |||||||||||||||||| |  ||||||| ||||||||    
T  43868683 catttcgataaattagaggacgtttttatccgattcgtgcaaattcagggactaatttgggtattcact 43868615  T

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Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 44528130 - 44528261
Alignment:
Q  1 taacgccccaaatggacgtagggattaatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgatt 100  Q
    |||||||||||||||||||||||| ||||||||||||  | ||  |||||||||||| || | | ||||||||  ||||||||||  |||||| | ||||    
T  44528130 taacgccccaaatggacgtagggactaatttgattgacgtttgttaaattcagggactaaacgtgcatttcgactaattgggggacatttttggccgatt 44528229  T
Q  101 cgtgcaaattcaggaatgaatttggatattca 132  Q
    ||||||||||||| || |||||||| ||||||    
T  44528230 cgtgcaaattcagaaacgaatttgggtattca 44528261  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 46 - 140
Target Start/End: Complemental strand, 37801555 - 37801461
Alignment:
Q  46 aaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgattcgtgcaaattcaggaatgaatttggatattcactcgaaaa 140  Q
    |||||||||||| |||| | ||||||||  |||||||||| ||||||| | ||||||||||||| |||| | |||||||||||||||||| ||||    
T  37801555 aaattcagggactaagcgtgcatttcgactaattgggggacgtttttggccgattcgtgcaaatccagggacgaatttggatattcactccaaaa 37801461  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 37803618 - 37803752
Alignment:
Q  1 taacgccccaaatggacgtagggattaatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgatt 100  Q
    ||||||| |||||||||||||||| ||||||||||||  | ||  ||||| |||||| |||| | ||||||||  |||||| |||  |||||  | ||||    
T  37803618 taacgccacaaatggacgtagggactaatttgattgacgtttgttaaatttagggactaagcgtgcatttcgactaattggaggacatttttagccgatt 37803717  T
Q  101 cgtgcaaattcaggaatgaatttggatattcactc 135  Q
    ||||||||| |||||| |||||||| |||||||||    
T  37803718 cgtgcaaatccaggaacgaatttgggtattcactc 37803752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 46 - 135
Target Start/End: Original strand, 15145797 - 15145886
Alignment:
Q  46 aaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgattcgtgcaaattcaggaatgaatttggatattcactc 135  Q
    ||||||||||||||||  | ||||||||| |||| ||||| ||||||||| ||||  || ||||| ||||| ||||||||||||||||||    
T  15145797 aaattcagggacaaagtgtgcatttcgattaatttggggacgtttttgtccgatttatgaaaatttaggaacgaatttggatattcactc 15145886  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 112
Target Start/End: Complemental strand, 15143092 - 15142983
Alignment:
Q  2 aacgccccaaatggacgtagggattaatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgattc 101  Q
    |||||| ||||||||||||| || || ||||||| |  | ||  ||||||||||||||||  | ||||||||| |||| | ||| ||||||||| |||||    
T  15143092 aacgccacaaatggacgtagagactattttgattaacgtttgttaaattcagggacaaagtgtgcatttcgattaatt-gaggacgtttttgtccgattc 15142994  T
Q  102 gtgcaaattca 112  Q
    ||| |||||||    
T  15142993 gtgaaaattca 15142983  T

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Target: scaffold0092 (Bit Score: 52; Significance: 5e-21; HSPs: 2)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 34733 - 34594
Alignment:
Q  1 taacgccccaaatggacgtagggattaatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgatt 100  Q
    |||||||||||||||||||||||| ||||||||||||  | ||  |||||||||||| |||| | ||||||||  ||||  |||| ||||||| | ||||    
T  34733 taacgccccaaatggacgtagggactaatttgattgacgtttgttaaattcagggactaagcgtgcatttcgacaaattaagggacgtttttgaccgatt 34634  T
Q  101 cgtgcaaattcaggaatgaatttggatattcactcgaaaa 140  Q
    ||||||||| || | | |||||||| ||||||||| ||||    
T  34633 cgtgcaaatccaaggacgaatttggttattcactccaaaa 34594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 135
Target Start/End: Original strand, 36852 - 36974
Alignment:
Q  13 tggacgtagggattaatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgattcgtgcaaattca 112  Q
    |||||| | ||| ||||||||||||  | ||  |||||||||||| |||| | ||||||||  |||||||||| ||||||| | ||||||||||||||||    
T  36852 tggacggaaggactaatttgattgacgtttgttaaattcagggactaagcgtgcatttcgactaattgggggacgtttttggccgattcgtgcaaattca 36951  T
Q  113 ggaatgaatttggatattcactc 135  Q
    || |||||||||| |||||||||    
T  36952 gggatgaatttgggtattcactc 36974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 6016 - 6127
Alignment:
Q  1 taacgccccaaatggacgtagggattaatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgatt 100  Q
    |||| ||||||||||||||||||| ||||||||| ||  | ||  ||||||||||||||| | | ||||||||| |||| ||||| ||||||||| ||||    
T  6016 taacaccccaaatggacgtagggactaatttgatggacgtttgttaaattcagggacaaaacgtgcatttcgattaattaggggacgtttttgtccgatt 6115  T
Q  101 cgtgcaaattca 112  Q
    |||| |||||||    
T  6116 cgtgaaaattca 6127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 135
Target Start/End: Complemental strand, 4547 - 4459
Alignment:
Q  47 aattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgattcgtgcaaattcaggaatgaatttggatattcactc 135  Q
    |||||||||||||||| | |||||| || |||||||||| |||||||||  ||||||  |||| |||| | ||||||||||||||||||    
T  4547 aattcagggacaaagcgtgcatttcaattaattgggggacgtttttgtccaattcgttaaaatccagggacgaatttggatattcactc 4459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 28475 - 28341
Alignment:
Q  1 taacgccccaaatggacgtagggattaatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgatt 100  Q
    |||| ||||||||||||||||||| || |||||||||  | ||  ||||||||||||||||  | ||||||||| |||||||||| ||||||||  ||||    
T  28475 taacaccccaaatggacgtagggactattttgattgacgtttgttaaattcagggacaaagagtgcatttcgattaattgggggacgtttttgttcgatt 28376  T
Q  101 cgtgcaaattcaggaatgaatttggatattcactc 135  Q
    |||| |||| || | | |||||||  |||||||||    
T  28375 cgtgaaaatccaaggacgaatttgagtattcactc 28341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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