View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14577_low_18 (Length: 213)
Name: NF14577_low_18
Description: NF14577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14577_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 24601594 - 24601398
Alignment:
| Q |
1 |
acaaagttagctgtagtgtactacaacgggcggaaacctaatctgtttagtgtatatgttgatgtcagactatcttctttgaaggatcagctggatcaaa |
100 |
Q |
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| T |
24601594 |
acaaggttagctgtagtgtactacaacggctggaaacctaatctgtttagggtatatgttgatgtcacactgttttctttgaaggatcagctggataaaa |
24601495 |
T |
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| Q |
101 |
ttaaggattgtctctaccacaaagacacatggaaggtggatagcgttgagaatcatcgtccgtcgacttaagtggaaacgtcttgttgtcctatatg |
197 |
Q |
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| T |
24601494 |
ttaaagattgtctctaccacaaagacacatggagggtggataacgttgagaatcgccgtccgtcgacttaagtgaaaacgtcttgttgtcctatatg |
24601398 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 155
Target Start/End: Complemental strand, 18690605 - 18690529
Alignment:
| Q |
79 |
ttgaaggatcagctggatcaaattaaggattgtctctaccacaaagacacatggaaggtggatagcgttgagaatca |
155 |
Q |
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| T |
18690605 |
ttgaaggatcaattggaccaaattaaccattgactcaaccacaaagacacaaggagggtggacagtgttgagtatca |
18690529 |
T |
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