View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14577_low_2 (Length: 575)
Name: NF14577_low_2
Description: NF14577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14577_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 545; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 1 - 557
Target Start/End: Complemental strand, 5509712 - 5509156
Alignment:
| Q |
1 |
tggaattgggcttggttttatagggattgtggtaactgaaagttttctagtagtgatttttctctcttttgggacaatggtagcaatgtttatgatattg |
100 |
Q |
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| T |
5509712 |
tggaattggggttggttttatagggattgtggtaactgaaagttttctaatagtgatttttctctcttttgggacaatggtagcaatgtttatgatattg |
5509613 |
T |
|
| Q |
101 |
ttatggttgaaaaatccaagctttttcatggattctaaatgggaagacacaaagttcaaacttttatcagaaaaatgtgaaaactttgaacttggtatga |
200 |
Q |
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| T |
5509612 |
ttatggttgaaaaatccaagctttttcatggattctaaatgggaagacacaaagttcaaacttttatcagaaaaatgtgaaaactttgaacttggtatga |
5509513 |
T |
|
| Q |
201 |
gagaaaatgttgagttaacagtttgaagaaactcaatcataggttttaacaatttcaaatcatggttggaagtagctgagttaagggtaaaacagtccaa |
300 |
Q |
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| T |
5509512 |
gagaaaatgttgagttaacagtttgaagaaactcaatcataggttttaacattttcaaatcatggttggaagtagctgagttaagggtaaaacagtccaa |
5509413 |
T |
|
| Q |
301 |
atcaaaagcaatggaaactttgatgtcttgttctaaaccccatcttttaagggaatgatagagatttttcaaagaagacagaacaacattaaggttgttt |
400 |
Q |
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| T |
5509412 |
atcaaaagcaatggaaactttgatgtcttgttctaaaccccatcttttaagggaatgatagagatttttcaaagaagacagaacaacattaaggttgttt |
5509313 |
T |
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| Q |
401 |
tggtcttgttggcagaaagttgaggttttcccaacaatgttggtgatttttgatgaagggtaatatgggaaaatgtttaacctaagccaagtttcagctg |
500 |
Q |
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| T |
5509312 |
tggtcttgttggcagaaagttgaggttttcccaacaatgttggtgatttttgatgaagggtaatatgggaaaatgtttaacctaagccaagtttcagctg |
5509213 |
T |
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| Q |
501 |
ataaaatgttgctagagaccatgttaaggtcttcattgttcaaagaaacagctaaag |
557 |
Q |
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| T |
5509212 |
ataaaatgttgctagagaccatgttaaggtcttcattgttcaaagaaacagctaaag |
5509156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 26 - 401
Target Start/End: Complemental strand, 20432989 - 20432616
Alignment:
| Q |
26 |
attgtggtaactgaaagttttctagtagtgatttttctctcttttgggacaatggtagcaatgtttatgatattgttatggttgaaaaatccaagctttt |
125 |
Q |
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| T |
20432989 |
attgtggtaactgaaagttttctagtagtgatttttatctcttttggtacaatggtagcaatgtttatgatattggt--ggctgaaaaatccaagctttt |
20432892 |
T |
|
| Q |
126 |
tcatggattctaaatgggaagacacaaagttcaaacttttatcagaaaaatgtgaaaactttgaacttggtatgagagaaaatgttgagttaacagtttg |
225 |
Q |
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| T |
20432891 |
tcatggattctaaatgggaagacacaaagtttgaacctttatcagaaaaatgtgaaaaccttgaacttggtatgagagaaaatgttgagttaacagtttg |
20432792 |
T |
|
| Q |
226 |
aagaaactcaatcataggttttaacaatttcaaatcatggttggaagtagctgagttaagggtaaaacagtccaaatcaaaagcaatggaaactttgatg |
325 |
Q |
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| T |
20432791 |
aagaaactcaatcataggttttaacattttcaaatcatggttggaagtagctgagttaagggtaaaacagtccaaatcaaaagcaatggaaactttgata |
20432692 |
T |
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| Q |
326 |
tcttgttctaaaccccatcttttaagggaatgatagagatttttcaaagaagacagaacaacattaaggttgtttt |
401 |
Q |
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| T |
20432691 |
tcttgttctaaaccccatcttttgagggaatgatagagatttttcaaagaagacagaacaacattaaggttgtttt |
20432616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 316 - 532
Target Start/End: Complemental strand, 20444903 - 20444686
Alignment:
| Q |
316 |
aactttgatgtcttgttctaaaccccatcttttaagggaatgatagagatttttcaaagaagacagaacaacattaa---------ggtt---gttttgg |
403 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
20444903 |
aactttgatgtcttgttctaaaccccatcttttgagggaatgatagagatttttcaaagaagacagaacaacattaaatttgttttggttttggttttgg |
20444804 |
T |
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| Q |
404 |
tcttgttggcagaaagttgaggttttcccaacaatgttggtgatttttgatgaagggtaatatgggaaaatgtttaacctaagccaagtttcagctgata |
503 |
Q |
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| T |
20444803 |
tcttgttggcagaaagttgaggtttttccaacaatcttggtttttttt-----------ttatgagaaaatgtttaacctaagccaagtttcagctgata |
20444715 |
T |
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| Q |
504 |
aaatgttgctagagaccatgttaaggtct |
532 |
Q |
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| T |
20444714 |
aaatgttgctagagaccttgttacggtct |
20444686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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