View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14577_low_4 (Length: 438)
Name: NF14577_low_4
Description: NF14577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14577_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 4 - 422
Target Start/End: Original strand, 2562612 - 2563032
Alignment:
| Q |
4 |
atgacttcagtctaacaaagcaaggaaatctgtttagagcctgcataattggatacattcaaatgaatcttgtggcatacaagattgtttactttgtgca |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||| |
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| T |
2562612 |
atgacttcagtctaacaaagcaaggaaatctgtttagagcctgcataattggatacattcaaatgaatattgtcacatacaagattgtttcctttgtgca |
2562711 |
T |
|
| Q |
104 |
aaagaatatatttatatttccttaacaatgttgttaattttacttgttaccaaggaagtgctagacacttaaaagtgagcaattatgtgcaatttttgga |
203 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2562712 |
aaagaatatatttatatttcctaaacaatgttgttaattttacttgctaccaaggaagtgctagacacttaaaagtgagcaattatgtgcaattcttgga |
2562811 |
T |
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| Q |
204 |
aacaacgaaaataccaaaataatttcataatttccaaaaatgcaacataacaagcatttcatc-ttatcttcattacaatgattcataccaacctttttt |
302 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
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| T |
2562812 |
aacaactaaaataccaaaataatttcataatttccaaaaatgcaacataacaagcatttcatctttatcttcattacaatgattcataccaacctccttt |
2562911 |
T |
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| Q |
303 |
ctagcaagttaaaatagaaaatattgccaataaataaagatactaaaataacttaccttatgtatctcgcaaaaacactcgaaac-tgagagtcattttc |
401 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
2562912 |
ctagcaagttaaaatagaaaatattgccaataaataaagatactaaaataacttaccttatgtatcttgcaaaaacactcgaaacttgagagtcattttc |
2563011 |
T |
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| Q |
402 |
ttgacattagcaagcaaatgt |
422 |
Q |
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||||||||||||||||||||| |
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| T |
2563012 |
ttgacattagcaagcaaatgt |
2563032 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 227
Target Start/End: Complemental strand, 24370540 - 24370502
Alignment:
| Q |
189 |
tgtgcaatttttggaaacaacgaaaataccaaaataatt |
227 |
Q |
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|||||| ||||||||||||| |||||||||||||||||| |
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| T |
24370540 |
tgtgcattttttggaaacaatgaaaataccaaaataatt |
24370502 |
T |
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