View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14577_low_5 (Length: 437)

Name: NF14577_low_5
Description: NF14577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14577_low_5
NF14577_low_5
[»] chr4 (1 HSPs)
chr4 (16-427)||(2344987-2345398)
[»] chr8 (4 HSPs)
chr8 (24-420)||(7321938-7322337)
chr8 (16-420)||(7319607-7320014)
chr8 (92-413)||(7318104-7318428)
chr8 (66-145)||(7324750-7324829)
[»] chr2 (3 HSPs)
chr2 (65-421)||(6521468-6521827)
chr2 (230-366)||(19623493-19623629)
chr2 (174-323)||(19143987-19144136)
[»] scaffold0208 (1 HSPs)
scaffold0208 (238-414)||(15648-15824)
[»] chr7 (1 HSPs)
chr7 (249-421)||(10570221-10570393)
[»] chr3 (1 HSPs)
chr3 (65-420)||(32984365-32984723)
[»] chr5 (1 HSPs)
chr5 (238-289)||(25191498-25191548)


Alignment Details
Target: chr4 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 16 - 427
Target Start/End: Complemental strand, 2345398 - 2344987
Alignment:
Q  16 cacaataaacccttttaattttgcaataacctctgcatttgtcactagtttaccaggtcttaatggacttggtatctctgcagcaagagcagattttggt 115  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2345398 cacaataaacccttttaattttgcaataacatctgcatttgtcactagtttaccaggtcttaatggacttggtatctctgcagcaagagcagattttggt 2345299  T
Q  116 ataaatggaagtgttccagtgcacactcatgatgcaactgaattacttatcgttgtcgaaggtcaaattactgccggatttattacgcgaactaaagttt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2345298 ataaatggaagtgttccagtgcacactcatgatgcaactgaattacttatcgttgtcgaaggtcaaattactgccggatttattacgcgaactaaagttt 2345199  T
Q  216 attcgaaaactattaaacctggtgatcttatagtttttccaaaaggactattgcattttgtagtgaactctggtgttggaaaagctgttgcttttgttgc 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2345198 attcgaaaactattaaacctggtgatcttatagtttttccaaaaggactattgcattttgtagtgaactctggtgttggaaaagctgttgcttttgttgc 2345099  T
Q  316 ttttagtagctcaaatcctagcacacaaatacttgatactctattatttggaaacaatttatcaacttccataattgcagagactactttacttgatgtg 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2345098 ttttagtagctcaaatcctagcacacaaatacttgatactctattatttggaaacaatttatcaacttccataattgcagagactactttacttgatgtg 2344999  T
Q  416 tcacaggttctg 427  Q
    |||||| |||||    
T  2344998 tcacagattctg 2344987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 154; Significance: 2e-81; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 24 - 420
Target Start/End: Original strand, 7321938 - 7322337
Alignment:
Q  24 acccttttaattttgcaataacctctgcatttgtcactagtttaccaggtcttaatggacttggtatctctgcagcaagagcagattttggtataaatgg 123  Q
    ||||||||||| || || ||||| |||| ||||| ||||||||||||||||||||| |||||||| ||||||||||||  | ||| ||||||||||||||    
T  7321938 acccttttaatgttacattaaccactgcttttgttactagtttaccaggtcttaatcgacttggtttctctgcagcaaagggagactttggtataaatgg 7322037  T
Q  124 aagtgttccagtgcacactcat---gatgcaactgaattacttatcgttgtcgaaggtcaaattactgccggatttattacgcgaactaaagtttattcg 220  Q
    || ||||||| |||||  ||||   ||||| |||||||| |||||| | || ||| | ||| | ||||| ||||||||||| |   | |||||||||| |    
T  7322038 aactgttccaatgcactttcatcctgatgcgactgaattgcttatcatagttgaaagccaattaactgctggatttattacaccggcaaaagtttatttg 7322137  T
Q  221 aaaactattaaacctggtgatcttatagtttttccaaaaggactattgcattttgtagtgaactctggtgttggaaaagctgttgcttttgttgctttta 320  Q
    |||| | |||||| ||||||| || ||||||||||||||||||| ||||||||| |||| ||| ||||||||||||||||||||  ||||| |||||| |    
T  7322138 aaaattgttaaacatggtgatattgtagtttttccaaaaggacttttgcattttttagttaacactggtgttggaaaagctgttatttttgctgctttaa 7322237  T
Q  321 gtagctcaaatcctagcacacaaatacttgatactctattatttggaaacaatttatcaacttccataattgcagagactactttacttgatgtgtcaca 420  Q
    ||||| ||||||| | ||  ||||||||||||  |||||||||||| ||| ||||||||||||| ||||||||| | |||||||||||||| ||||||||    
T  7322238 gtagcacaaatcccaccatgcaaatacttgattatctattatttggcaacgatttatcaacttcaataattgcaaacactactttacttgaagtgtcaca 7322337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 16 - 420
Target Start/End: Original strand, 7319607 - 7320014
Alignment:
Q  16 cacaataaacccttttaattttgcaataacctctgcatttgtcactagtttaccaggtcttaatggacttggtatctctgcagcaagagcagattttggt 115  Q
    ||||||| ||||||||||| ||  | ||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |  || |||||     
T  7319607 cacaatagacccttttaatgttagattaaccactgcattcgtcactagtttaccaggtcttaatggacttggtatctccgcagcaaggggggactttggc 7319706  T
Q  116 ataaatggaagtgttccagtgcacactcat---gatgcaactgaattacttatcgttgtcgaaggtcaaattactgccggatttattacgcgaactaaag 212  Q
     ||||||||| ||||||| ||||   ||||   ||||||| |||||| |||||||| ||  |||| ||  | ||||| ||||||||||| | ||| ||||    
T  7319707 ttaaatggaactgttccaatgcattttcatcctgatgcaaatgaattgcttatcgtagttaaaggccagttaactgctggatttattacaccaacaaaag 7319806  T
Q  213 tttattcgaaaactattaaacctggtgatcttatagtttttccaaaaggactattgcattttgtagtgaactctggtgttggaaaagctgttgcttttgt 312  Q
    || ||| ||||||| ||||||||||||||  | ||||| ||||||||||||| || ||||||| ||| ||| ||| ||||||||| ||| |||||| ||     
T  7319807 ttgatttgaaaactgttaaacctggtgatagtttagttattccaaaaggacttttacattttggagttaacactgatgttggaaatgctattgcttctgc 7319906  T
Q  313 tgcttttagtagctcaaatcctagcacacaaatacttgatactctattatttggaaacaatttatcaacttccataattgcagagactactttacttgat 412  Q
    |  ||| ||||||||||| ||||  |   |||||||||||  |||||||||||| ||| ||||||||||||| ||||| ||| |  | ||||||||||||    
T  7319907 ttttttcagtagctcaaaccctaaaatggaaatacttgattatctattatttggcaacgatttatcaacttcaataatcgcaaacccaactttacttgat 7320006  T
Q  413 gtgtcaca 420  Q
    ||||||||    
T  7320007 gtgtcaca 7320014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 92 - 413
Target Start/End: Complemental strand, 7318428 - 7318104
Alignment:
Q  92 tctgcagcaagagcagattttggtataaatggaagtgttccagtgcacactca---tgatgcaactgaattacttatcgttgtcgaaggtcaaattactg 188  Q
    ||||||||||||  |||| ||||||||||||||||||| ||| ||||||||||   |||||||||||||||||| |||||| |  |||||||||||||||    
T  7318428 tctgcagcaagaatagatattggtataaatggaagtgtaccaatgcacactcatcctgatgcaactgaattactaatcgttattcaaggtcaaattactg 7318329  T
Q  189 ccggatttattacgcgaactaaagtttattcgaaaactattaaacctggtgatcttatagtttttccaaaaggactattgcattttgtagtgaactctgg 288  Q
      ||||| || || |  || ||| |||    ||||| | |||| ||||||||| ||   |||||||||| ||||||||||||||||  | | ||||||||    
T  7318328 ttggattcatcacacctacaaaacttttggtgaaaattcttaatcctggtgatgtttgggtttttccaataggactattgcattttcaatttaactctgg 7318229  T
Q  289 tgttggaaaagctgttgcttttgttgcttttagtagctcaaatcctagcacacaaatacttgatactctattatttggaaacaatttatcaacttccata 388  Q
    || |||||| ||| |||||| || |||||||||||||||||| ||||||| |||  || ||  | || | |||||||| ||||| ||| ||||||||| |    
T  7318228 tgatggaaatgctattgcttatgctgcttttagtagctcaaaccctagcatacatgtaattagtcctttgttatttggtaacaacttaccaacttccaca 7318129  T
Q  389 attgcagagactactttacttgatg 413  Q
    |||  | |||||||| | |||||||    
T  7318128 attcaaaagactactcttcttgatg 7318104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 66 - 145
Target Start/End: Original strand, 7324750 - 7324829
Alignment:
Q  66 taccaggtcttaatggacttggtatctctgcagcaagagcagattttggtataaatggaagtgttccagtgcacactcat 145  Q
    |||||||||| ||||||||||||||||||| |||||||  |||| ||||  | ||||||||||| ||| |||||||||||    
T  7324750 taccaggtctcaatggacttggtatctctgtagcaagaatagatcttggcttcaatggaagtgtaccaatgcacactcat 7324829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 65 - 421
Target Start/End: Original strand, 6521468 - 6521827
Alignment:
Q  65 ttaccaggtcttaatggacttggtatctctgcagcaagagcagattttggtataaatggaagtgttccagtgcacactcat---gatgcaactgaattac 161  Q
    |||||| |||| |||||||||| ||| ||||||||||||| |||  |||||  |||||||  ||||||| |||| ||||||   ||||||||||||||||    
T  6521468 ttaccaagtctcaatggacttgatatatctgcagcaagagtagacattggtccaaatggatctgttccaatgcatactcatcctgatgcaactgaattac 6521567  T
Q  162 ttatcgttgtcgaaggtcaaattactgccggatttattacgcgaactaaagtttattcgaaaactattaaacctggtgatcttatagtttttccaaaagg 261  Q
    | ||| | ||  |||||  | | ||||| |||||||| |  |  ||  ||||||||   |||  | |||| |||  |||| |||| ||||||||||||||    
T  6521568 taatcatggttcaaggtagagtcactgctggatttatcaaccttacagaagtttatgtcaaagatcttaagcctactgatattatggtttttccaaaagg 6521667  T
Q  262 actattgcattttgtagtgaactctggtgttggaaaagctgttgcttttgttgcttttagtagctcaaatcctagcacacaaatacttgatactctatta 361  Q
    |||||||||||||||||| |||||||||| |||| ||||| ||||||||| | ||| |||||||||||| ||||||   ||  | |||||| || || |     
T  6521668 actattgcattttgtagttaactctggtgctggagaagctattgcttttgctacttatagtagctcaaagcctagctttcagtttcttgattctgtactg 6521767  T
Q  362 tttggaaacaatttatcaacttccataattgcagagactactttacttgatgtgtcacag 421  Q
    ||||||||||| ||| | ||||| ||||||||| |||||||| | |||||||| ||||||    
T  6521768 tttggaaacaagttacctacttctataattgcaaagactactcttcttgatgtttcacag 6521827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 230 - 366
Target Start/End: Complemental strand, 19623629 - 19623493
Alignment:
Q  230 aaacctggtgatcttatagtttttccaaaaggactattgcattttgtagtgaactctggtgttggaaaagctgttgcttttgttgcttttagtagctcaa 329  Q
    ||||| |||||| |||| ||||||||| ||||| | |||||||||| ||| || ||||||   |||||||||  |||||||| ||||||||||||   ||    
T  19623629 aaaccaggtgatattattgtttttccacaaggaatgttgcattttgcagttaattctggtaagggaaaagctactgcttttggtgcttttagtagtgaaa 19623530  T
Q  330 atcctagcacacaaatacttgatactctattatttgg 366  Q
    ||||||  || ||||||||||||| ||| || |||||    
T  19623529 atcctactactcaaatacttgatattcttttgtttgg 19623493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 323
Target Start/End: Complemental strand, 19144136 - 19143987
Alignment:
Q  174 aaggtcaaattactgccggatttattacgcgaactaaagtttattcgaaaactattaaacctggtgatcttatagtttttccaaaaggactattgcattt 273  Q
    ||||| |||||||||| |||||| | ||||  |||| | ||||||| || ||  | ||||| |||||| || | ||||||||||||||  | ||||||||    
T  19144136 aaggtgaaattactgctggatttttgacgcctactacattttattctaagacgttgaaaccgggtgatatttttgtttttccaaaagggatgttgcattt 19144037  T
Q  274 tgtagtgaactctggtgttggaaaagctgttgcttttgttgcttttagta 323  Q
    || ||| || ||||||   |||||||||  |||||||| |||| ||||||    
T  19144036 tgcagttaattctggtaagggaaaagctactgcttttggtgctcttagta 19143987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0208
Description:

Target: scaffold0208; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 238 - 414
Target Start/End: Original strand, 15648 - 15824
Alignment:
Q  238 tgatcttatagtttttccaaaaggactattgcattttgtagtgaactctggtgttggaaaagctgttgcttttgttgcttttagtagctcaaatcctagc 337  Q
    |||| |||| |||||||||||||||||||||||||||||||| |||||| ||| |||| ||||| ||||||||| | ||| |||||||||||| ||||||    
T  15648 tgatattatggtttttccaaaaggactattgcattttgtagttaactctcgtgctggagaagctattgcttttgctacttatagtagctcaaagcctagc 15747  T
Q  338 acacaaatacttgatactctattatttggaaacaatttatcaacttccataattgcagagactactttacttgatgt 414  Q
       ||  | |||||| || || | ||||||||||| ||| | ||||| ||||||||| |||||||| | ||||||||    
T  15748 tttcagtttcttgattctttactgtttggaaacaagttacctacttctataattgcaaagactactcttcttgatgt 15824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 249 - 421
Target Start/End: Complemental strand, 10570393 - 10570221
Alignment:
Q  249 tttttccaaaaggactattgcattttgtagtgaactctggtgttggaaaagctgttgcttttgttgcttttagtagctcaaatcctagcacacaaatact 348  Q
    ||||||||||||||||||||||||||||||| |||||| ||| |||| ||||| ||||||||| | ||| |||||||||||| ||||||   ||  | ||    
T  10570393 tttttccaaaaggactattgcattttgtagttaactcttgtgctggagaagctattgcttttgctacttatagtagctcaaagcctagctttcagtttct 10570294  T
Q  349 tgatactctattatttggaaacaatttatcaacttccataattgcagagactactttacttgatgtgtcacag 421  Q
    ||||  | || | ||||||||||| ||| | ||||| ||||||||| |||||||| | |||||||| ||||||    
T  10570293 tgattatttactgtttggaaacaagttacctacttctataattgcaaagactactcttcttgatgtttcacag 10570221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 65 - 420
Target Start/End: Original strand, 32984365 - 32984723
Alignment:
Q  65 ttaccaggtcttaatggacttggtatctctgcagcaagagcagattttggtataaatggaagtgttccagtgcacactcat---gatgcaactgaattac 161  Q
    |||||| |||| |||||||| | | ||||||| ||||||| |||| ||||| ||||||||  ||||||  |||| ||||||   ||||||||||||||||    
T  32984365 ttaccaagtctcaatggactcgatgtctctgcggcaagagtagatattggtgtaaatggatctgttccgatgcatactcatcccgatgcaactgaattac 32984464  T
Q  162 ttatcgttgtcgaaggtcaaattactgccggatttattacgcgaactaaagtttattcgaaaactattaaacctggtgatcttatagtttttccaaaagg 261  Q
    | ||| | ||  ||||| || |||| || ||||||||||  |  ||  |||||| |   |||  | || | | ||||||| |||| |||||||| || ||    
T  32984465 taatcatggttcaaggtaaagttacagctggatttattaaccttacagaagtttttgtcaaagatcttcagcttggtgatattatggtttttcctaaggg 32984564  T
Q  262 actattgcattttgtagtgaactctggtgttggaaaagctgttgcttttgttgcttttagtagctcaaatcctagcacacaaatacttgatactctatta 361  Q
    |||| |||||||||| || ||||| |||| || | ||||| ||||||||| | ||| |||||||||||| ||||||   ||  | ||||||  | |||||    
T  32984565 actaatgcattttgttgttaactccggtgctgaagaagctattgcttttgctacttatagtagctcaaagcctagctttcagtttcttgattatgtatta 32984664  T
Q  362 tttggaaacaatttatcaacttccataattgcagagactactttacttgatgtgtcaca 420  Q
    ||| |||| || ||| | ||||| ||||||||| | |||||| | |||||||| |||||    
T  32984665 tttagaaataacttacctacttctataattgcacaaactactcttcttgatgtttcaca 32984723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 289
Target Start/End: Original strand, 25191498 - 25191548
Alignment:
Q  238 tgatcttatagtttttccaaaaggactattgcattttgtagtgaactctggt 289  Q
    |||| |||| ||||||||||||| |||||||||||||||||| |||||||||    
T  25191498 tgatattatggtttttccaaaag-actattgcattttgtagttaactctggt 25191548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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