View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14577_low_6 (Length: 419)
Name: NF14577_low_6
Description: NF14577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14577_low_6 |
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| [»] scaffold0531 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 16 - 411
Target Start/End: Original strand, 41382917 - 41383306
Alignment:
| Q |
16 |
atatttcatggtttattttagagaatattt--catggtaagtgtaatttgggtttaaaatataccatccaagggctgccatggaaaaggggagaccaaga |
113 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41382917 |
atatttcatggtttattttagagaatatttttcatggtaagtgtaatttgggtttaaaatataccatccaagggctgccatggaaaaggggagaccaaga |
41383016 |
T |
|
| Q |
114 |
acaccagctccaaccatggcagtgacattgtggaaagtagagtaccaccattttgcatttctttcagagttatttggttgtcagtcttcactttgttttt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
41383017 |
acaccagctccaaccatggcagtgacattgtggaaagtagagtaccaccattttgcatttctttcagagttatttggttgtcggtcttcactttgttttt |
41383116 |
T |
|
| Q |
214 |
tcatccctgaatttcctctttctgctgcactatctgattttccttcaatctatttgaactagaacaataaattaaaagagnnnnnnnncatatatacata |
313 |
Q |
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|||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
41383117 |
ccatccctgaatttcctcttt--------ctatctggttttccttcaatctatttgaactagaacaataaattaaaagagttgtttttcatatatacata |
41383208 |
T |
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| Q |
314 |
cataataaaaatctatttgatcttattatagcaatatcctcgtagtagttatattagaataatattctcatagtttctctcaaatgaaataaacccta |
411 |
Q |
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| T |
41383209 |
cacaataaaaatctatttgatcttattatagcaatatcctcgtagtagttatattagaataatattctcatagtttctctcaaatgaaataaacccta |
41383306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 114 - 172
Target Start/End: Complemental strand, 43851846 - 43851788
Alignment:
| Q |
114 |
acaccagctccaaccatggcagtgacattgtggaaagtagagtaccaccattttgcatt |
172 |
Q |
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| T |
43851846 |
acaccagctccaaccatggcagtaacattgtgaaaagctgcgtaccaccattttgcatt |
43851788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0531 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: scaffold0531
Description:
Target: scaffold0531; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 27 - 289
Target Start/End: Original strand, 3898 - 4159
Alignment:
| Q |
27 |
tttattttagagaatatttcatggtaagtgtaatttgggtttaaaatataccatccaagggctgccatggaaaaggggagaccaagaacaccagctccaa |
126 |
Q |
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||||||||||||| ||||||||||||||||||||| |||||| || ||||||||||||| |||||||||||| ||||||| ||||||||||||||||||| |
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| T |
3898 |
tttattttagagactatttcatggtaagtgtaattagggtttgaa-tataccatccaagagctgccatggaataggggaggccaagaacaccagctccaa |
3996 |
T |
|
| Q |
127 |
ccatggcagtgacattgtggaaagtagagtaccaccattttgcatttctttcagagttatttggttgtcagtcttcactttgttttttcatccctgaatt |
226 |
Q |
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|||| ||||||||||||||||||| ||| ||||||||||||||||| |||| ||| || |||| | ||||||||| ||||||| | | ||||||| || |
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| T |
3997 |
ccattgcagtgacattgtggaaagaagaataccaccattttgcattcctttgggagctaattggaagccagtcttcaatttgtttctccctccctgattt |
4096 |
T |
|
| Q |
227 |
tcctctttctgctgcactatctgattttccttcaatctatttgaactagaacaataaattaaa |
289 |
Q |
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|||| |||| | ||| || ||| | ||||||||||||||||| ||| |||||| ||||||||| |
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| T |
4097 |
tcctatttccgttgcgctctctaagtttccttcaatctatttcaacgagaacattaaattaaa |
4159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 124; Significance: 1e-63; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 27 - 190
Target Start/End: Complemental strand, 8041137 - 8040974
Alignment:
| Q |
27 |
tttattttagagaatatttcatggtaagtgtaatttgggtttaaaatataccatccaagggctgccatggaaaaggggagaccaagaacaccagctccaa |
126 |
Q |
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||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
8041137 |
tttattttagagaatatttcatggtgcgtgtaattagggtttgaaatataccatccaagagctgccatggaaaaggggagaccaagaacaccagctccaa |
8041038 |
T |
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| Q |
127 |
ccatggcagtgacattgtggaaagtagagtaccaccattttgcatttctttcagagttatttgg |
190 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||| ||| |||| ||| |||| |
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| T |
8041037 |
ccatggcagtgacattgtggaaagtcgagtaccaccattttgcattccttccagaattacttgg |
8040974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 27 - 190
Target Start/End: Original strand, 7972904 - 7973067
Alignment:
| Q |
27 |
tttattttagagaatatttcatggtaagtgtaatttgggtttaaaatataccatccaagggctgccatggaaaaggggagaccaagaacaccagctccaa |
126 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||| |||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
7972904 |
tttattttacagaatatttaatggtaagtgtaattagggtttgaaatataccatccaagagctgccatggcaaaggggagaccaagaacaccagctccaa |
7973003 |
T |
|
| Q |
127 |
ccatggcagtgacattgtggaaagtagagtaccaccattttgcatttctttcagagttatttgg |
190 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||| ||| |||| ||| |||| |
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| T |
7973004 |
ccatggcagtgacattgtggaaagtcgagtaccaccattttgcattccttccagaattacttgg |
7973067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 27 - 283
Target Start/End: Complemental strand, 8031769 - 8031510
Alignment:
| Q |
27 |
tttattttagagaatatttcatggtaagtgtaatttgggtttaaaatataccatccaagggctgccatggaaaaggggagaccaagaacaccagctccaa |
126 |
Q |
| |
|
||||| |||||||||| |||||| |||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
8031769 |
tttatgttagagaatacttcatgacaagtgtaattagggtttgaaatataccatccaagatatgccatggaaaaggggagaccaagaacaccagctccaa |
8031670 |
T |
|
| Q |
127 |
ccatggcagtgacattgtggaaagtagagtaccaccattttgcatttctttcagagttatttggttgtcagtcttcactttgttttttcatccc---tga |
223 |
Q |
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|||| ||||||||||||||||||| ||| ||||||||||||||||| |||||||| || ||| | ||||||||| ||||||||| | || | ||| |
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| T |
8031669 |
ccattgcagtgacattgtggaaagaagaataccaccattttgcattcctttcagaactaactggaagccagtcttcaatttgtttttccctctctgatga |
8031570 |
T |
|
| Q |
224 |
atttcctctttctgctgcactatctgattttccttcaatctatttgaactagaacaataa |
283 |
Q |
| |
|
|||||||||| | ||||||| | || |||||||||| |||||||||| |||||||||| |
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|
| T |
8031569 |
ttttcctctttttcctgcactctgtgggtttccttcaacctatttgaacgagaacaataa |
8031510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 70 - 177
Target Start/End: Original strand, 7979992 - 7980099
Alignment:
| Q |
70 |
aaatataccatccaagggctgccatggaaaaggggagaccaagaacaccagctccaaccatggcagtgacattgtggaaagtagagtaccaccattttgc |
169 |
Q |
| |
|
|||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
7979992 |
aaatataccatccaagttgtgccatggcatgagggagaccaagaacaccagctccaaccatggcagtgacattgtgaaaagctgagtaccaccattttgc |
7980091 |
T |
|
| Q |
170 |
atttcttt |
177 |
Q |
| |
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||| |||| |
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| T |
7980092 |
attccttt |
7980099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 335 - 387
Target Start/End: Complemental strand, 8040743 - 8040691
Alignment:
| Q |
335 |
cttattatagcaatatcctcgtagtagttatattagaataatattctcatagt |
387 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8040743 |
cttattatagcaatatcctcgtagtagttatattagaataatattctcatagt |
8040691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 365
Target Start/End: Original strand, 7973297 - 7973333
Alignment:
| Q |
329 |
tttgatcttattatagcaatatcctcgtagtagttat |
365 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||| |
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| T |
7973297 |
tttgatcttgttatagaaatatcctcgtagtagttat |
7973333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 69 - 176
Target Start/End: Original strand, 14199112 - 14199219
Alignment:
| Q |
69 |
aaaatataccatccaagggctgccatggaaaaggggagaccaagaacaccagctccaaccatggcagtgacattgtggaaagtagagtaccaccattttg |
168 |
Q |
| |
|
||||||||||||||||| ||||||| | | ||||||| ||||||||||||||||||||||||||| ||||||||||| | ||| ||||||||||||| |
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| T |
14199112 |
aaaatataccatccaagttgagccatggcataagggagactaagaacaccagctccaaccatggcagtaacattgtggaatgcagaataccaccattttg |
14199211 |
T |
|
| Q |
169 |
catttctt |
176 |
Q |
| |
|
|||||||| |
|
|
| T |
14199212 |
catttctt |
14199219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 175
Target Start/End: Original strand, 361787 - 361848
Alignment:
| Q |
114 |
acaccagctccaaccatggcagtgacattgtggaaagtagagtaccaccattttgcatttct |
175 |
Q |
| |
|
|||||||| |||||||| ||||| ||||| || ||||| || |||||||||||||| ||||| |
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|
| T |
361787 |
acaccagcaccaaccatagcagtcacattatgaaaagttgaataccaccattttgcttttct |
361848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 175
Target Start/End: Original strand, 38827953 - 38828017
Alignment:
| Q |
111 |
agaacaccagctccaaccatggcagtgacattgtggaaagtagagtaccaccattttgcatttct |
175 |
Q |
| |
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||||||||||| ||||||||||| || | ||||||||| | || ||||||||||| |||||||| |
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|
| T |
38827953 |
agaacaccagcaccaaccatggctgttagattgtggaacgccgaataccaccatttggcatttct |
38828017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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