View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14577_low_7 (Length: 405)
Name: NF14577_low_7
Description: NF14577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14577_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 17 - 393
Target Start/End: Complemental strand, 32774862 - 32774486
Alignment:
| Q |
17 |
aactacaattctttgcaatatcaaagatggcgatgcgaccgagattttaaacatatctgaaaacaaatttggcctctttaatagaaaactaataaacttc |
116 |
Q |
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| T |
32774862 |
aactacaattctttgcaatatcaaggattgcgatgcgaccgagattttaaacatatctgaaaacaaatttggcctctttaatagaaaactaataaacttc |
32774763 |
T |
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| Q |
117 |
ttaccttagctcaaatttttgatatgaagtgtcttttggaattgctgagaggaaaacatcagcaactattaatgccatctgaagctttgcagctgagctc |
216 |
Q |
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| T |
32774762 |
ttaccttagctcaaatttttgatatgaagtgtcttttggaattgctgagaggaaaacatcagcaactattaatgccatctgaagctttgcagctgagctc |
32774663 |
T |
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| Q |
217 |
aaggtgtcatttatcatgagactctgcaagtgtaggttacnnnnnnnnnnnnttaatattgaaaagaatatgtaactgttgttggtataatgtatatgaa |
316 |
Q |
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| T |
32774662 |
aaggtgtcatttatcatgagactctgcaagtgtaggttacaaaaaagaaaaattaatattgaaaagattatgtaactgttgttggtataatgtatatgaa |
32774563 |
T |
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| Q |
317 |
tttaatctaacatgtttcttccacttacttctccatgatgatttagttttaacaagtagtccactatagtctgtgct |
393 |
Q |
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| T |
32774562 |
tttaatctaacatgtttcttccacttacttctccatgatgatttagttttaacaagtagtccactatagtctgtgct |
32774486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 153 - 242
Target Start/End: Original strand, 29120580 - 29120669
Alignment:
| Q |
153 |
tggaattgctgagaggaaaacatcagcaactattaatgccatctgaagctttgcagctgagctcaaggtgtcatttatcatgagactctg |
242 |
Q |
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| T |
29120580 |
tggaagtgccgagaggaatgcatcagccactgttagtgccatctgaagctttgctactgagctcagggtatcatttatcattagactctg |
29120669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 385
Target Start/End: Original strand, 29121020 - 29121064
Alignment:
| Q |
341 |
ttacttctccatgatgatttagttttaacaagtagtccactatag |
385 |
Q |
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| T |
29121020 |
ttacttctccttgatgatttagtgataacaagtagtccaatatag |
29121064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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