View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14578_high_11 (Length: 239)
Name: NF14578_high_11
Description: NF14578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14578_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 236
Target Start/End: Original strand, 23877926 - 23878145
Alignment:
| Q |
17 |
aatattatgataggaatttagtacaagagatttatactttaaagtccatttgccaatgtgcactagttaacatttttgaaaaagcttgagacctatttct |
116 |
Q |
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| T |
23877926 |
aatattatgataggaatttagtacaagagatttatactttaaagtccatttgccaatgtgcactagttaacatttttgaaaaagcttgagacctatttct |
23878025 |
T |
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| Q |
117 |
cctaagttgagtttgataaaccagaaaattgactatgtatagaactttaccacaattataaaactgtagtttaattccaagtttgctgtaaatattnnnn |
216 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
23878026 |
cctaagctgagtttgataaaccagaaaattgactatgtatagaactttaccacaattataaaactgtagtttaattccaagtttgctgtaaatagtaaaa |
23878125 |
T |
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| Q |
217 |
nnnttgctgcagaataatct |
236 |
Q |
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||||||||||||||||| |
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| T |
23878126 |
aaattgctgcagaataatct |
23878145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 17 - 120
Target Start/End: Complemental strand, 23421207 - 23421104
Alignment:
| Q |
17 |
aatattatgataggaatttagtacaagagatttatactttaaagtccatttgccaatgtgcactagttaacatttttgaaaaagcttgagacctatttct |
116 |
Q |
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||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||| ||||| |
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| T |
23421207 |
aatattatgataggaatttagtagaagagatttataccttaaagttcatttgccaatgtgtactagtttacatttttgaaaaagcttgagacctgtttct |
23421108 |
T |
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| Q |
117 |
ccta |
120 |
Q |
| |
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|||| |
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| T |
23421107 |
ccta |
23421104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 23423159 - 23423117
Alignment:
| Q |
17 |
aatattatgataggaatttagtacaagagatttatactttaaa |
59 |
Q |
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| T |
23423159 |
aatattatgatagtaatttagtaaatgagatttatactttaaa |
23423117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 23875794 - 23875836
Alignment:
| Q |
17 |
aatattatgataggaatttagtacaagagatttatactttaaa |
59 |
Q |
| |
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||||||||||||| ||||||||| | ||||||||||||||||| |
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| T |
23875794 |
aatattatgatagtaatttagtaaatgagatttatactttaaa |
23875836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 21371911 - 21371867
Alignment:
| Q |
129 |
ttgataaaccagaaaattgactatgtatagaactttaccacaatt |
173 |
Q |
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|||| ||||||||| |||||||||||||||||||||||||||||| |
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| T |
21371911 |
ttgaaaaaccagaatattgactatgtatagaactttaccacaatt |
21371867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 11766077 - 11766121
Alignment:
| Q |
129 |
ttgataaaccagaaaattgactatgtatagaactttaccacaatt |
173 |
Q |
| |
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|||| ||||||||| |||||||||||||||||||||||||||||| |
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| T |
11766077 |
ttgaaaaaccagaatattgactatgtatagaactttaccacaatt |
11766121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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