View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14578_high_14 (Length: 229)
Name: NF14578_high_14
Description: NF14578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14578_high_14 |
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| [»] scaffold0242 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 10 - 198
Target Start/End: Complemental strand, 29894650 - 29894462
Alignment:
| Q |
10 |
ctattgaggtgtaatttgacgaaggtgcgatcagagattatggttttccaagacttgttaacacaactgaatcgaacaagagatataaccggaaggaagg |
109 |
Q |
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||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||| |
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| T |
29894650 |
ctattgaggtgtaatttgacgaaggtgggatcaaagattagggttttccaagacttgctaacacaagtgaatcgaacaagagatataaccggaagtaagg |
29894551 |
T |
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| Q |
110 |
aaagtatcttgacgatgagatcatcggggagaaccaccagcgttgtcggagtcatgatagatgcagtcgggtgtcggcgttgaggatga |
198 |
Q |
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| T |
29894550 |
aaagtatcttgaagatgagatcgtcagggagaaccaccagctttgtcggaatcatgatagatgcagtcgggtgttggcgtcgaggatga |
29894462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 12 - 207
Target Start/End: Original strand, 29477204 - 29477404
Alignment:
| Q |
12 |
attgaggtgtaatttgacgaaggtgcgatcagagattatggttttccaagacttgttaacacaactgaatcgaacaagagatataaccggaaggaaggaa |
111 |
Q |
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| T |
29477204 |
attgaggtgtaatttcacaaagctgggatcagagattagggatttccaagacttgctaacacatttgagtcgaacaagagatttgacgggaaggaaggaa |
29477303 |
T |
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| Q |
112 |
agtatcttgacgatgagatcatcggggagaaccaccagcgttgtcggagtcatgat-----agatgcagtcgggtgtcggcgttgaggatgaaacctaaa |
206 |
Q |
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| T |
29477304 |
agtaactctgcgatgagatcgtcaggaaggaccaccggcgtcaccggagtcatgatcgtggaaacgcagtggggtggcggcgttgaggatgaaaccaaaa |
29477403 |
T |
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| Q |
207 |
t |
207 |
Q |
| |
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| T |
29477404 |
t |
29477404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 134
Target Start/End: Original strand, 29446494 - 29446615
Alignment:
| Q |
13 |
ttgaggtgtaatttgacgaaggtgcgatcagagattatggttttccaagacttgttaacacaactgaatcgaacaagagatataaccggaaggaaggaaa |
112 |
Q |
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|||||||||||||||||||||||| ||| || ||| |||||||||| |||| || ||||| ||||||||||||||||| | || ||||||||||||| |
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| T |
29446494 |
ttgaggtgtaatttgacgaaggtgttatcggaaattcgggttttccaatacttattgacacacttgaatcgaacaagagatttgacgggaaggaaggaaa |
29446593 |
T |
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| Q |
113 |
gtatcttgacgatgagatcatc |
134 |
Q |
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| || | ||||||||||||| |
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| T |
29446594 |
aaacctcggcgatgagatcatc |
29446615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 52 - 147
Target Start/End: Complemental strand, 29105989 - 29105894
Alignment:
| Q |
52 |
gttttccaagacttgttaacacaactgaatcgaacaagagatataaccggaaggaaggaaagtatcttgacgatgagatcatcggggagaaccacc |
147 |
Q |
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| T |
29105989 |
gttttccaagacttgctgacagacctaaatcgaagaagaaatataacgggaaggaaggaaagaacttctgcgatgagatcatcggggagaaccacc |
29105894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 152
Target Start/End: Original strand, 29480327 - 29480467
Alignment:
| Q |
12 |
attgaggtgtaatttgacgaaggtgcgatcagagattatggttttccaagacttgttaacacaactgaatcgaacaagagatataaccggaaggaaggaa |
111 |
Q |
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||||||||||||||| || ||| || ||| || |||| ||||||||||||||| ||||| ||||||||||| ||||| | || |||||||||||| |
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| T |
29480327 |
attgaggtgtaattttacaaagttgggattggaaattagggttttccaagacttacagacacacttgaatcgaacaggagatttgacgggaaggaaggaa |
29480426 |
T |
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| Q |
112 |
agtatcttgacgatgagatcatcggggagaaccaccagcgt |
152 |
Q |
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| T |
29480427 |
agtaactctgtgatgagatcatcaggaaggaccaccggcgt |
29480467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 19638002 - 19638052
Alignment:
| Q |
16 |
aggtgtaatttgacgaaggtgcgatcagagattatggttttccaagacttg |
66 |
Q |
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| T |
19638002 |
aggtgtaatttgacaaaagtgggatcagagatgatggttttccatgacttg |
19638052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0242 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: scaffold0242
Description:
Target: scaffold0242; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 12 - 207
Target Start/End: Original strand, 14555 - 14755
Alignment:
| Q |
12 |
attgaggtgtaatttgacgaaggtgcgatcagagattatggttttccaagacttgttaacacaactgaatcgaacaagagatataaccggaaggaaggaa |
111 |
Q |
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||||||||||||||| || || ||| ||||||| |||| ||||||||||| |||||||||||| ||||||||||||||||| | || |||||||||||| |
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| T |
14555 |
attgaggtgtaatttcacaaaagtgggatcagatattagggttttccaagccttgttaacacatttgaatcgaacaagagatttcacgggaaggaaggaa |
14654 |
T |
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| Q |
112 |
agtatcttgacgatgagatcatcggggagaaccaccagcgttgtcggagtcatgat-----agatgcagtcgggtgtcggcgttgaggatgaaacctaaa |
206 |
Q |
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|||| || |||||||||| | || || | |||| |||| |||||||||||| | | ||||| ||||| ||||||||||||||||||||||| |
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| T |
14655 |
agtaactctgcgatgagatcgcccggaaggaacaccggcgtcaccggagtcatgatcgtggaaacgcagtggggtggcggcgttgaggatgaaacctaaa |
14754 |
T |
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| Q |
207 |
t |
207 |
Q |
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| T |
14755 |
t |
14755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0242; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 12 - 207
Target Start/End: Original strand, 23390 - 23590
Alignment:
| Q |
12 |
attgaggtgtaatttgacgaaggtgcgatcagagattatggttttccaagacttgttaacacaactgaatcgaacaagagatataaccggaaggaaggaa |
111 |
Q |
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||||||||||||||| || || ||| ||||||| |||| ||||||||||| |||||||||||| ||||||||||||||||| | || |||||||||||| |
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| T |
23390 |
attgaggtgtaatttcacaaaagtgggatcagatattagggttttccaagccttgttaacacatttgaatcgaacaagagatttcacgggaaggaaggaa |
23489 |
T |
|
| Q |
112 |
agtatcttgacgatgagatcatcggggagaaccaccagcgttgtcggagtcatgat-----agatgcagtcgggtgtcggcgttgaggatgaaacctaaa |
206 |
Q |
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|||| || |||||||||| | || || | |||| |||| |||||||||||| | | ||||| ||||| ||||||||||||||||||||||| |
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| T |
23490 |
agtaactctgcgatgagatcgcccggaaggaacaccggcgtcaccggagtcatgatcgtggaaacgcagtggggtggcggcgttgaggatgaaacctaaa |
23589 |
T |
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| Q |
207 |
t |
207 |
Q |
| |
|
| |
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| T |
23590 |
t |
23590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 140
Target Start/End: Original strand, 4015737 - 4015861
Alignment:
| Q |
16 |
aggtgtaatttgacgaaggtgcgatcagagattatggttttccaagacttgttaacacaactgaatcgaacaagagatataaccggaaggaaggaaagta |
115 |
Q |
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||||| ||||| || |||||| ||| || |||| ||||||||||||||| | ||||| |||||||||||||||||| | || ||||| || ||||||| |
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| T |
4015737 |
aggtgcaatttcacaaaggtggaatcggaaattagggttttccaagacttactcacacacctgaatcgaacaagagatctcactggaagaaatgaaagta |
4015836 |
T |
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| Q |
116 |
tcttgacgatgagatcatcggggag |
140 |
Q |
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|| | |||||| || |||||||| |
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| T |
4015837 |
cctcaaagatgagttcgtcggggag |
4015861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 10218256 - 10218160
Alignment:
| Q |
19 |
tgtaatttgacgaaggtgcgatcagagattatggttttccaagacttgttaacacaactgaatcgaacaagagatataaccggaaggaaggaaagta |
115 |
Q |
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|||||||| || || ||| | ||||| |||| |||||||||||| || | ||||| ||||| | |||||||||| | |||||||| |||||||||| |
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| T |
10218256 |
tgtaatttcacaaaagtgggttcagaaattagggttttccaagatttactcacacacctgaagcaaacaagagatttcaccggaagaaaggaaagta |
10218160 |
T |
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