View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14578_high_3 (Length: 440)
Name: NF14578_high_3
Description: NF14578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14578_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 392; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Complemental strand, 1194640 - 1194218
Alignment:
| Q |
1 |
cttgggtaatttgtgttacttgatcctggtttagcaaaagagggatcatcaaaatttaccctgaccagtgcattggaaaactttttgaatgtatttgtct |
100 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
1194640 |
cttgggtaatttgtgttatttgatcctggtttagcaaaagagggatcatcaaaatttaccctgactagtgcattggaaaactttttgaatgtatttgtct |
1194541 |
T |
|
| Q |
101 |
acacgcatatactttgacatcaaagtaaaaacaaactagttggttagtttgatgatctttcgaatgagcttgtgtttagaacaatagctagaaatcttgg |
200 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1194540 |
acacgcatatactttgacatcaaagtagaaacaaactagttggttagtttgatgatctttcgaatgagcttgtgtttagaacaatagctagaaatcttgg |
1194441 |
T |
|
| Q |
201 |
accttagtttgtaatatcaatagtttgtggtattccattctatttagcttttctgttccaggaattcttatatagttctgttacttcagtcttgtcatta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
1194440 |
accttagtttgtaatatcaatagtttgtggtattccattctatttagcttttctattccaggaattcttat-tggttctgttacttcagtcttgtcatta |
1194342 |
T |
|
| Q |
301 |
acttgtatcttgtcaaactttcatttaagctgttagattctaagccaactgctcatgatataattaattcaatgaataattatcacaaagttcatgaaca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
1194341 |
acttgtatcttgtcaaactttcatttaagctgttagattctaagccaactgctcatgatacaattaattcaatgaataattatcacaaagttcatgaaca |
1194242 |
T |
|
| Q |
401 |
attttgattttctattgaacactt |
424 |
Q |
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|||||||||||||||||||||||| |
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| T |
1194241 |
attttgattttctattgaacactt |
1194218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 1183884 - 1183732
Alignment:
| Q |
1 |
cttgggtaatttgtgttacttgatcctggtttagcaaaagagggatcatcaaaatttaccctgaccagtgcattggaaaactttttgaatgtatttgtc- |
99 |
Q |
| |
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|||||||||| | |||||||||||| ||||||||||||||||||||||| |||||||| |||||| | ||||||||||||||||||||||| || | |
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| T |
1183884 |
cttgggtaatctatgttacttgatcttggtttagcaaaagagggatcatgaaaatttaacctgactaatgcattggaaaactttttgaatg----tgcca |
1183789 |
T |
|
| Q |
100 |
-tacacgcatatactttgacatcaaagtaaaaacaaactagttggttagtttgatga |
155 |
Q |
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||| | || |||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
1183788 |
aaacaagaatctactttgacatcaaagtaaaaacaaactagctggttagtttgatga |
1183732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 170 - 241
Target Start/End: Complemental strand, 1188907 - 1188836
Alignment:
| Q |
170 |
ttgtgtttagaacaatagctagaaatcttggaccttagtttgtaatatcaatagtttgtggtattccattct |
241 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||| ||||||||||||||| ||||||||| ||||||||| |
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| T |
1188907 |
ttgtgttttgaacaatagctagaaatcttgaaccttggtttgtaatatcaatggtttgtggttttccattct |
1188836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 280 - 342
Target Start/End: Complemental strand, 1183629 - 1183567
Alignment:
| Q |
280 |
gttacttcagtcttgtcattaacttgtatcttgtcaaactttcatttaagctgttagattcta |
342 |
Q |
| |
|
||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||| |
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| T |
1183629 |
gttacttcagtcttgtcgttaagttgtatcgtgtcaaactttcatttaagctgttagattcta |
1183567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 898207 - 898147
Alignment:
| Q |
32 |
tagcaaaagagggatcatcaaaatttaccctgaccagtgcattggaaaactttttgaatgt |
92 |
Q |
| |
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|||| |||||||||||||||||||||||||| || ||||||||| || ||||||||||||| |
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| T |
898207 |
tagcgaaagagggatcatcaaaatttaccctcactagtgcattgcaagactttttgaatgt |
898147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 200 - 243
Target Start/End: Complemental strand, 1183733 - 1183690
Alignment:
| Q |
200 |
gaccttagtttgtaatatcaatagtttgtggtattccattctat |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||||| |
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|
| T |
1183733 |
gaccttagtttgtaatatcaatagtttgtggttttcctttctat |
1183690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 382 - 415
Target Start/End: Complemental strand, 1188687 - 1188654
Alignment:
| Q |
382 |
atcacaaagttcatgaacaattttgattttctat |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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| T |
1188687 |
atcacaaagttcatgaacaattttgattttctat |
1188654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 113 - 169
Target Start/End: Original strand, 5510378 - 5510434
Alignment:
| Q |
113 |
tttgacatcaaagtaaaaacaaactagttggttagtttgatgatctttcgaatgagc |
169 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||| |||||||||| ||||||| |
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|
| T |
5510378 |
tttgacatcaaagcaaaaacaaactagttggttgatttaatgatctttcaaatgagc |
5510434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 169 - 233
Target Start/End: Complemental strand, 5457146 - 5457081
Alignment:
| Q |
169 |
cttgtgtttagaacaatagctagaa-atcttggaccttagtttgtaatatcaatagtttgtggtat |
233 |
Q |
| |
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||||||||| ||||||||||||||| ||||||||||||||| ||| |||||| || ||| |||||| |
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| T |
5457146 |
cttgtgttttgaacaatagctagaagatcttggaccttagtatgtcatatcagtactttttggtat |
5457081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 168 - 241
Target Start/End: Original strand, 5510462 - 5510535
Alignment:
| Q |
168 |
gcttgtgtttagaacaatagctagaaatcttggaccttagtttgtaatatcaatagtttgtggtattccattct |
241 |
Q |
| |
|
|||||||||| ||| |||| ||||||||| |||||||| ||||||||||||| || ||||||| |||| |||| |
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| T |
5510462 |
gcttgtgttttgaataatatctagaaatcctggaccttggtttgtaatatcactaaattgtggttttcctttct |
5510535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 376
Target Start/End: Complemental strand, 10204159 - 10204119
Alignment:
| Q |
336 |
gattctaagccaactgctcatgatataattaattcaatgaa |
376 |
Q |
| |
|
||||||||||||| |||| |||||| ||||||||||||||| |
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|
| T |
10204159 |
gattctaagccaagtgcttatgatacaattaattcaatgaa |
10204119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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