View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14578_high_4 (Length: 392)

Name: NF14578_high_4
Description: NF14578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14578_high_4
NF14578_high_4
[»] chr1 (3 HSPs)
chr1 (13-376)||(43617731-43618097)
chr1 (20-225)||(43648477-43648675)
chr1 (222-376)||(43648269-43648421)


Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-125; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 13 - 376
Target Start/End: Complemental strand, 43618097 - 43617731
Alignment:
Q  13 gagcagagaaggttcgtggaagccccaaatagatcagatggagtatggacaatggagattagtccaattatttgggagacttagaaaaactatcggtcaa 112  Q
    |||||||||||| |||| ||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  43618097 gagcagagaaggctcgttgaagccccagatagatcagatggagtatgggcaatggagattagtcaaattatttgggagacttagaaaaactataggtcaa 43617998  T
Q  113 accattaagaaagatttacgttcaaatgatat--atgttttttgacatatctatg-taggacattatagtattgtctaaccatgcagttcaccttgccca 209  Q
    ||||||||||||||||||||| |||||||| |  || |||||||||||||||||  |||||||||||||| |||||||| |||| ||||||||||||| |    
T  43617997 accattaagaaagatttacgtacaaatgatttttattttttttgacatatctataataggacattatagtgttgtctaatcatgtagttcaccttgccga 43617898  T
Q  210 aatggaaaagttatttagatgttagtctcataaaacaattgatttgtgtgcggcaatttattctataatatcaacactggcgcagtcgaagacttcacta 309  Q
    ||||||||||||||||||||| |||| ||||||||||||| ||| ||||  |||| |||||||||||||||||||| ||||||||| ||||| || ||||    
T  43617897 aatggaaaagttatttagatgatagtttcataaaacaatttattcgtgtatggcagtttattctataatatcaacaatggcgcagttgaagattttacta 43617798  T
Q  310 agagaggtcagagtggattttatcacctaaacaagcattgtaagagctatttgtttgttcatctaat 376  Q
    ||||||||||||||||||||||| ||||||| ||| ||| ||||||||| |||||||||||||||||    
T  43617797 agagaggtcagagtggattttattacctaaagaagtattttaagagctacttgtttgttcatctaat 43617731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 20 - 225
Target Start/End: Complemental strand, 43648675 - 43648477
Alignment:
Q  20 gaaggttcgtggaagccccaaatagatcagatggagtatggacaatggagattagtccaattatttgggagacttagaaaaactatcggtcaaaccatta 119  Q
    ||||| |||| ||||||||||||||||||||||||| |||||       ||||||| ||||||||| | ||||||||||||||||| |||||| ||||||    
T  43648675 gaaggctcgttgaagccccaaatagatcagatggagcatgga-------gattagttcaattatttcgaagacttagaaaaactataggtcaagccatta 43648583  T
Q  120 agaaagatttacgttcaaatgatatatgttttttgacatatctatg-taggacattatagtattgtctaaccatgc--agttcaccttgcccaaatggaa 216  Q
    ||||||||||| |||||||||||   | ||||||||||||| || | ||||| ||||||||  | ||||| |||||  ||||||||||||||||||||||    
T  43648582 agaaagatttatgttcaaatgat---ttttttttgacatatatacgataggaaattatagtgctctctaatcatgcagagttcaccttgcccaaatggaa 43648486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 222 - 376
Target Start/End: Complemental strand, 43648421 - 43648269
Alignment:
Q  222 atttagatgttagtctcataaaacaattgatttgtgtgcggcaatttattctataatatcaacactggcgcagtcgaagacttcactaagagaggtcaga 321  Q
    ||||||||| |||| |||||||  |||| |||||| ||  ||| ||||||||||||||||||||| |||||||| ||||| || ||||| ||||||||||    
T  43648421 atttagatgatagtttcataaattaatttatttgtctg--gcagtttattctataatatcaacaccggcgcagttgaagatttgactaacagaggtcaga 43648324  T
Q  322 gtggattttatcacctaaacaagcattgtaagagctatttgtttgttcatctaat 376  Q
    ||||||||||| ||||||||||| ||| ||||||||| |||||||||||||||||    
T  43648323 gtggattttattacctaaacaagtattttaagagctacttgtttgttcatctaat 43648269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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