View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14578_high_5 (Length: 368)
Name: NF14578_high_5
Description: NF14578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14578_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 17 - 364
Target Start/End: Original strand, 23782804 - 23783151
Alignment:
| Q |
17 |
catccaagttccacacctccctactaggttccatattttctttagaacttgattcagatttttgaagcaattgattgttgccaatatcatcatctttgta |
116 |
Q |
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| T |
23782804 |
catccaagttccacacctccctacttggttccatattttctttagaacttgattcagatttttgaagcaattgattgttgccaatatcatcatctttgta |
23782903 |
T |
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| Q |
117 |
tatcgtggttttcatgctacccaagggtgagaaagatgaattattttcctgatcttcgtagttgtttgagtcggaattacatctaccaaatgtggttggc |
216 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23782904 |
tatcgtggttttcatgctacccaaggttgagaaagatgaattattttcctgatcttcgtagttgtttgagtcggaattacatctaccaaatgtggttggc |
23783003 |
T |
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| Q |
217 |
aatgatttctcacgaagaatggcttgtgttggagttgatctttgagtgaaacttccaaaaccttgaatacctcttgataaccttctacattggtttcttt |
316 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23783004 |
aatgatttctcgcgaagaatggcttgtgttggagttgatctttgagtgaaacttccaaaaccttgaatacctcttgataaccttctacattggtttcttt |
23783103 |
T |
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| Q |
317 |
cttcctttagaagatttccttcttccaacagtttcattactctctctg |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23783104 |
cttcctttagaagatttccttcttccaacagtttcattactctctctg |
23783151 |
T |
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