View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14578_high_6 (Length: 357)
Name: NF14578_high_6
Description: NF14578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14578_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 20 - 345
Target Start/End: Complemental strand, 51863476 - 51863151
Alignment:
| Q |
20 |
ccattgaggttatgaggtcagattcttagccctgagctgacacctcacggaccgagccaccgaggaaatgaaacttcaaggcaataagcaaaatattaca |
119 |
Q |
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| T |
51863476 |
ccattgaggttatgaggtcagattcttagccctgagctgacacctcacggaccgagccaccgaggaaatgaaacttcaaggcaataagcaaaatattaca |
51863377 |
T |
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| Q |
120 |
taccagatagtgaagtagtgtaggccttactcttccttatacaaaaggctcaaaataagtaatgtgtgcacaccattcaactaaatcaatgcaagcaaac |
219 |
Q |
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| T |
51863376 |
taccagatagtgaagtagtgtaggccttactcttccttatacaaaaggctcaaaataagtaatgtgtgcacaccattcaactaaatcaatgcaagcaaac |
51863277 |
T |
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| Q |
220 |
tatatatatacataacaaaccaaggaacctcactttgcaattcaggaataatgaagtatatttggtttgttaaatgccttaacatatacatatgaatgtg |
319 |
Q |
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| T |
51863276 |
tatatatatacataacaaaccaaggaacctcactttgcaattcagggataatgaagtatatttggtttgttaaatgccttaacatatacatatgaatgtg |
51863177 |
T |
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| Q |
320 |
agtatgcatgcttacaagtataatct |
345 |
Q |
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| T |
51863176 |
agtatgcatgcttacaagtataatct |
51863151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 221 - 294
Target Start/End: Original strand, 43180501 - 43180574
Alignment:
| Q |
221 |
atatatatacataacaaaccaaggaacctcactttgcaattcaggaataatgaagtatatttggtttgttaaat |
294 |
Q |
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| T |
43180501 |
atatatacacttaacaaaccaaggaacctcactttgcaattcaggggtaatcaagtatatttggttttttaaat |
43180574 |
T |
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