View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14578_high_7 (Length: 319)

Name: NF14578_high_7
Description: NF14578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14578_high_7
NF14578_high_7
[»] chr1 (1 HSPs)
chr1 (1-302)||(36926300-36926601)
[»] chr3 (1 HSPs)
chr3 (46-281)||(49608226-49608461)
[»] chr2 (2 HSPs)
chr2 (148-282)||(386538-386672)
chr2 (45-105)||(42692170-42692230)
[»] chr7 (1 HSPs)
chr7 (1-227)||(46709065-46709291)
[»] chr8 (6 HSPs)
chr8 (52-116)||(6456147-6456211)
chr8 (4-116)||(6262233-6262345)
chr8 (58-116)||(6362116-6362174)
chr8 (35-116)||(6330783-6330864)
chr8 (56-116)||(6351231-6351291)
chr8 (56-116)||(6423148-6423208)


Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 36926300 - 36926601
Alignment:
Q  1 ccttggtggccaaagatgcatactctcaaagatctgattgaaacttgcactattattatatggattgcttcagctctccatgctgcagtcaactttggac 100  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36926300 ccttggtggccaaagatgcatactctcgaagagctgattgaaacttgcactattattatatggattgcttcagctctccatgctgcagtcaactttggac 36926399  T
Q  101 agtatccatatggaggctatccaccgagtcgtccttctatgagccgacgactcatgcctgaaaaaggaactcaagagtacaatgaacttttggaaaatcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36926400 agtatccatatggaggctatccaccgagtcgtccttctatgagccgacgactcatgcctgaaaaaggaactcaagagtacaatgaacttttggaaaatcc 36926499  T
Q  201 tgacaaagcttttctgaaaacaatcacttcacagtttcaagctgttcttggtctttcacttgtggaaatattgtctaggcatgctagtgatgaggtctac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36926500 tgacaaagcttttctgaaaacaatcacttcacagtttcaagctgttcttggtctttcacttgtggaaatattgtctaggcatgctagtgatgaggtctac 36926599  T
Q  301 ct 302  Q
    ||    
T  36926600 ct 36926601  T

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Target: chr3 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 46 - 281
Target Start/End: Complemental strand, 49608461 - 49608226
Alignment:
Q  46 tgcactattattatatggattgcttcagctctccatgctgcagtcaactttggacagtatccatatggaggctatccaccgagtcgtccttctatgagcc 145  Q
    ||||||||||||||||||||||||||| ||||||||| ||  |||||||||||||| ||||||||||||||||||||||| ||  || || || |||| |    
T  49608461 tgcactattattatatggattgcttcaactctccatgttgttgtcaactttggacattatccatatggaggctatccaccaagcagttctactctgagtc 49608362  T
Q  146 gacgactcatgcctgaaaaaggaactcaagagtacaatgaacttttggaaaatcctgacaaagcttttctgaaaacaatcacttcacagtttcaagctgt 245  Q
    |  ||||||||||||||||| | |||||||| |||||| ||||| ||||||||||||||||  ||||| |||| ||||| ||||||||||||||||||||    
T  49608361 ggtgactcatgcctgaaaaaaggactcaagaatacaatcaacttgtggaaaatcctgacaagccttttttgaagacaattacttcacagtttcaagctgt 49608262  T
Q  246 tcttggtctttcacttgtggaaatattgtctaggca 281  Q
    |||||   |||||||| || |||| |||||| ||||    
T  49608261 tcttgacatttcacttttgaaaatcttgtctgggca 49608226  T

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Target: chr2 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 148 - 282
Target Start/End: Original strand, 386538 - 386672
Alignment:
Q  148 cgactcatgcctgaaaaaggaactcaagagtacaatgaacttttggaaaatcctgacaaagcttttctgaaaacaatcacttcacagtttcaagctgttc 247  Q
    |||||||||||||||| |||||||||||| ||||| ||||||  |||||||||| |||| |||||| | |||||||| ||||||||||||||||||||||    
T  386538 cgactcatgcctgaaataggaactcaagaatacaacgaacttgaggaaaatcctcacaaggcttttttaaaaacaattacttcacagtttcaagctgttc 386637  T
Q  248 ttggtctttcacttgtggaaatattgtctaggcat 282  Q
    |||| |||||| ||||| |||| ||||||||||||    
T  386638 ttggcctttcaattgtgaaaatcttgtctaggcat 386672  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 105
Target Start/End: Complemental strand, 42692230 - 42692170
Alignment:
Q  45 ttgcactattattatatggattgcttcagctctccatgctgcagtcaactttggacagtat 105  Q
    |||||||| | | |||||||||||||||||||| ||||| || || || ||||||||||||    
T  42692230 ttgcactactgtcatatggattgcttcagctcttcatgcagctgttaattttggacagtat 42692170  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 46709291 - 46709065
Alignment:
Q  1 ccttggtggccaaagatgcatactctcaaagatctgattgaaacttgcactattattatatggattgcttcagctctccatgctgcagtcaactttggac 100  Q
    |||||||||||||||||||| ||  |  ||||  |||  ||||| ||||| || ||||||||||||||||||||||| ||||| || || ||||||||||    
T  46709291 ccttggtggccaaagatgcaaacagtggaagagttgacggaaacatgcacaatcattatatggattgcttcagctctacatgcagctgtaaactttggac 46709192  T
Q  101 agtatccatatggaggctatccaccgagtcgtccttctatgagccgacgactcatgcctgaaaaaggaactcaagagtacaatgaacttttggaaaatcc 200  Q
    | ||||| | || ||| ||  |||| |  |||||  | || || || ||| |||||||||| |||||||||  ||||||  |||||||| ||  ||||||    
T  46709191 aatatccttttgcaggttactcaccaaaccgtccaacaataagtcgccgattcatgcctgagaaaggaactatagagtatgatgaacttgtgacaaatcc 46709092  T
Q  201 tgacaaagcttttctgaaaacaatcac 227  Q
    ||| ||||||||| |||||||||||||    
T  46709091 tgataaagcttttttgaaaacaatcac 46709065  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 52 - 116
Target Start/End: Complemental strand, 6456211 - 6456147
Alignment:
Q  52 attattatatggattgcttcagctctccatgctgcagtcaactttggacagtatccatatggagg 116  Q
    ||||| ||||||| |||||||||||| ||||| ||||| ||||||||||||||||| ||||||||    
T  6456211 attatcatatggactgcttcagctcttcatgcagcagttaactttggacagtatccttatggagg 6456147  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 116
Target Start/End: Complemental strand, 6262345 - 6262233
Alignment:
Q  4 tggtggccaaagatgcatactctcaaagatctgattgaaacttgcactattattatatggattgcttcagctctccatgctgcagtcaactttggacagt 103  Q
    |||||||| || ||||| |||| | ||||  ||||| ||  ||||| |||||| ||||||| |||||||||||| ||||| || || || |||||||| |    
T  6262345 tggtggccgaaaatgcaaactcgcgaagagttgattcaagtttgcagtattatcatatggactgcttcagctcttcatgcagctgttaattttggacaat 6262246  T
Q  104 atccatatggagg 116  Q
    |||| ||||||||    
T  6262245 atccgtatggagg 6262233  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 116
Target Start/End: Complemental strand, 6362174 - 6362116
Alignment:
Q  58 atatggattgcttcagctctccatgctgcagtcaactttggacagtatccatatggagg 116  Q
    ||||||||||||||||| || ||||| ||||| || |||||||| ||||| ||||||||    
T  6362174 atatggattgcttcagcacttcatgcagcagttaattttggacaatatccgtatggagg 6362116  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 116
Target Start/End: Complemental strand, 6330864 - 6330783
Alignment:
Q  35 tgattgaaacttgcactattattatatggattgcttcagctctccatgctgcagtcaactttggacagtatccatatggagg 116  Q
    |||||||| ||||||||||  | ||||||||||||||||| |  ||||| || || || ||||| || ||||||||||||||    
T  6330864 tgattgaagcttgcactatcctcatatggattgcttcagcacatcatgcagctgttaattttggtcaatatccatatggagg 6330783  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 116
Target Start/End: Complemental strand, 6351291 - 6351231
Alignment:
Q  56 ttatatggattgcttcagctctccatgctgcagtcaactttggacagtatccatatggagg 116  Q
    ||||||||||||||||||| || ||||| || || || || ||||| ||||||||||||||    
T  6351291 ttatatggattgcttcagcacttcatgcagctgttaatttcggacaatatccatatggagg 6351231  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 116
Target Start/End: Complemental strand, 6423208 - 6423148
Alignment:
Q  56 ttatatggattgcttcagctctccatgctgcagtcaactttggacagtatccatatggagg 116  Q
    ||||||||||||||||||| || ||||| || || || |||||||| || |||||||||||    
T  6423208 ttatatggattgcttcagcacttcatgcagctgttaattttggacaatacccatatggagg 6423148  T

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