View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14578_high_9 (Length: 255)
Name: NF14578_high_9
Description: NF14578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14578_high_9 |
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| [»] chr1 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 36926045 - 36926299
Alignment:
| Q |
1 |
atcaattgcttcacctcttcaaatttcagaggaatggctgttaaggactcaacttcgccatacggtcttcgattattaatcgaggattacccttatgcag |
100 |
Q |
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| T |
36926045 |
atcaattgcttcacctcttcaaatttcagaggaatggctgttaaggactcaacttcgccatacggtcttcgattattaatcgaggattacccttatgcag |
36926144 |
T |
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| Q |
101 |
ttgatggactggagatttggtttgccatcaagacatgggttaaagactactgctccatttactacaaggatgaggactcgatcaagaaagactcggaact |
200 |
Q |
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| T |
36926145 |
ttgatggactggagatttggtttgccatcaagacatgggttaaagactactgctccatttactacaaggatgaggactcaatcaagaaagactcggaact |
36926244 |
T |
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| Q |
201 |
tcaattttggtggaaggaaataagggaagagggtcatggtgacaagaaagatgag |
255 |
Q |
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| T |
36926245 |
tcaatcttggtggaaggaaataagggaagagggtcatggtgacaagaaagatgag |
36926299 |
T |
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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 219
Target Start/End: Complemental strand, 46709523 - 46709328
Alignment:
| Q |
24 |
tttcagaggaatggctgttaaggactcaacttcgccatacggtcttcgattattaatcgaggattacccttatgcagttgatggactggagatttggttt |
123 |
Q |
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| T |
46709523 |
tttcagaggaatggcaattaaagattcagcttctccgcatggccttcgactaatagtcaacgattacccttacgcggtggacgggctagagatttggttt |
46709424 |
T |
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| Q |
124 |
gccatcaagacatgggttaaagactactgctccatttactacaaggatgaggactcgatcaagaaagactcggaacttcaattttggtggaaggaa |
219 |
Q |
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| T |
46709423 |
gcaatcaacacatgggttcaggactactgttccttttactacaagaatgatgacacggtaaagaaagatgcagaactacaatcttggtggaaggaa |
46709328 |
T |
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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 163
Target Start/End: Complemental strand, 6262522 - 6262441
Alignment:
| Q |
82 |
gaggattacccttatgcagttgatggactggagatttggtttgccatcaagacatgggttaaagactactgctccatttact |
163 |
Q |
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| T |
6262522 |
gaggattacccttatgctgttgatggacttgacatttgggatgctattaagacatgggtacaagactacgtctccatatact |
6262441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 149
Target Start/End: Original strand, 9606044 - 9606114
Alignment:
| Q |
79 |
atcgaggattacccttatgcagttgatggactggagatttggtttgccatcaagacatgggttaaagacta |
149 |
Q |
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| T |
9606044 |
atcgaggactacccttatgcagttgatggactcgagatatgggatgctattaagtcatgggtccaagacta |
9606114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 255
Target Start/End: Complemental strand, 44000277 - 44000223
Alignment:
| Q |
201 |
tcaattttggtggaaggaaataagggaagagggtcatggtgacaagaaagatgag |
255 |
Q |
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| T |
44000277 |
tcaatcttggtggaaggaaataagagaaaatggtcacggtgacaagaaatatgag |
44000223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 151
Target Start/End: Complemental strand, 49608567 - 49608531
Alignment:
| Q |
115 |
atttggtttgccatcaagacatgggttaaagactact |
151 |
Q |
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| T |
49608567 |
atttggtttgccatcaagacatgggttgaggactact |
49608531 |
T |
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