View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14578_low_1 (Length: 649)
Name: NF14578_low_1
Description: NF14578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14578_low_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 298; Significance: 1e-167; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 111 - 429
Target Start/End: Original strand, 20230548 - 20230868
Alignment:
| Q |
111 |
aactattctttattgactaaccatac--ctcatcattgacttgcttacaccaatccactctacctataaacacactcaaaagcacatcaatggtagtaat |
208 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20230548 |
aactattctttattgactaaccatacacctcatcattgacttgcttacaccaatccactctccctataaacacactcaaaagcacatcaatggtagtaat |
20230647 |
T |
|
| Q |
209 |
gagtactctcaaaaactcaatacatccatggctaatttggctaatttccataaaattcattacctcttcaccctgattattttcctcacttttttcacat |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
20230648 |
gagtactctcaaaaactcaatacatccatggctaatttggctaatttccataaaattcattacctcttcacccttattattttcctcacttttttcacat |
20230747 |
T |
|
| Q |
309 |
ctactaattcatgggatgacccttttttcctataccaatattgctcaagcaaccgaacatcagcctatacttcattccaatttgatctcaccaccctcct |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20230748 |
ctactaattcatgggatgacccttttttcctataccaatattgctcaagcaaccgaacatcagcctatacttcattccaatttgatctcaccaccctcct |
20230847 |
T |
|
| Q |
409 |
ctcttccttatcaaccaaagc |
429 |
Q |
| |
|
||||||||||||| ||||||| |
|
|
| T |
20230848 |
ctcttccttatcatccaaagc |
20230868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 111 - 429
Target Start/End: Original strand, 22124532 - 22124852
Alignment:
| Q |
111 |
aactattctttattgactaaccatac--ctcatcattgacttgcttacaccaatccactctacctataaacacactcaaaagcacatcaatggtagtaat |
208 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22124532 |
aactattctttattgactaaccatacacctcatcattgacttgcttacaccaatccactctccctataaacacactcaaaagcacatcaatggtagtaat |
22124631 |
T |
|
| Q |
209 |
gagtactctcaaaaactcaatacatccatggctaatttggctaatttccataaaattcattacctcttcaccctgattattttcctcacttttttcacat |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
22124632 |
gagtactctcaaaaactcaatacatccatggctaatttggctaatttccataaaattcattacctcttcacccttattattttcctcacttttttcacat |
22124731 |
T |
|
| Q |
309 |
ctactaattcatgggatgacccttttttcctataccaatattgctcaagcaaccgaacatcagcctatacttcattccaatttgatctcaccaccctcct |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22124732 |
ctactaattcatgggatgacccttttttcctataccaatattgctcaagcaaccgaacatcagcctatacttcattccaatttgatctcaccaccctcct |
22124831 |
T |
|
| Q |
409 |
ctcttccttatcaaccaaagc |
429 |
Q |
| |
|
||||||||||||| ||||||| |
|
|
| T |
22124832 |
ctcttccttatcatccaaagc |
22124852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 495 - 633
Target Start/End: Original strand, 20230934 - 20231072
Alignment:
| Q |
495 |
tctatggcatgttcttatgtagggatgatgttccctctcaactttgtcaacaatgtatactaaatgcaacacaaagactttcctcacaatgttctttgtc |
594 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
20230934 |
tctatggcatgttcttatgtagggatgatgttccctctcaactttgtcaacaatgtatactaaatgcaacacaaagactttccttgcaatgttctttgtc |
20231033 |
T |
|
| Q |
595 |
caaagaaggtattgtttggtacaatgaatgtatggtttg |
633 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20231034 |
taaagaaggtattgtttggtacaatgaatgtatggtttg |
20231072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 495 - 633
Target Start/End: Original strand, 22124918 - 22125056
Alignment:
| Q |
495 |
tctatggcatgttcttatgtagggatgatgttccctctcaactttgtcaacaatgtatactaaatgcaacacaaagactttcctcacaatgttctttgtc |
594 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
22124918 |
tctatggcatgttcttatgtagggatgatgttccctctcaactttgtcaacaatgtatactaaatgcaacacaaagactttccttgcaatgttctttgtc |
22125017 |
T |
|
| Q |
595 |
caaagaaggtattgtttggtacaatgaatgtatggtttg |
633 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22125018 |
taaagaaggtattgtttggtacaatgaatgtatggtttg |
22125056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 20230405 - 20230534
Alignment:
| Q |
1 |
tgaaacgtaaatcttggatcaaacacccaccacaaatgtactgtattaattaatgtgtggattgtcaaaagatttgtcca----atatcaattttctcca |
96 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
20230405 |
tgaaacgtaaatcttggatcaaacaaccaccacaaatgtactgtcttaattaatgtgtggattgtc-aaagatttgtccaatatatatcaattttctcca |
20230503 |
T |
|
| Q |
97 |
taaacttatcaattaactattctttattgac |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
20230504 |
taaacttatcaattaactattctttattgac |
20230534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 22124389 - 22124518
Alignment:
| Q |
1 |
tgaaacgtaaatcttggatcaaacacccaccacaaatgtactgtattaattaatgtgtggattgtcaaaagatttgtcca----atatcaattttctcca |
96 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
22124389 |
tgaaacgtaaatcttggatcaaacaaccaccacaaatgtactgtcttaattaatgtgtggattgtc-aaagatttgtccaatatatatcaattttctcca |
22124487 |
T |
|
| Q |
97 |
taaacttatcaattaactattctttattgac |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
22124488 |
taaacttatcaattaactattctttattgac |
22124518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 103; Significance: 6e-51; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 495 - 633
Target Start/End: Complemental strand, 10403956 - 10403818
Alignment:
| Q |
495 |
tctatggcatgttcttatgtagggatgatgttccctctcaactttgtcaacaatgtatactaaatgcaacacaaagactttcctcacaatgttctttgtc |
594 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
10403956 |
tctatggtatgttcttatgtaggggtgatgttccctctcaactttgtcaacaatgtatagtaaatgcaacacaaagactttccttagaatgttctttgtc |
10403857 |
T |
|
| Q |
595 |
caaagaaggtattgtttggtacaatgaatgtatggtttg |
633 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
10403856 |
aaaagaaggtgttgtttggtatgatgaatgtatggtttg |
10403818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 246 - 426
Target Start/End: Complemental strand, 10404199 - 10404019
Alignment:
| Q |
246 |
tggctaatttccataaaattcattacctcttcaccctgattattttcctcacttttttcacatctactaattcatgggatgacccttttttcctatacca |
345 |
Q |
| |
|
||||||||||| | || ||||| |||||||||||||| || || || |||| | |||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
10404199 |
tggctaatttctacaacattcactacctcttcacccttatcatcttgctcaatattttcacatctactaattcatgggatgaccctttttacctatacca |
10404100 |
T |
|
| Q |
346 |
atattgctcaagcaaccgaacatcagcctatacttcattccaatttgatctcaccaccctcctctcttccttatcaaccaa |
426 |
Q |
| |
|
||||||||||||||| ||||| || || ||||||| || |||||||| ||||| ||||||||||||||||||||| |||| |
|
|
| T |
10404099 |
atattgctcaagcaatagaacagcatccaatacttcctttcaatttgacctcacaaccctcctctcttccttatcatccaa |
10404019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University