View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14578_low_12 (Length: 317)
Name: NF14578_low_12
Description: NF14578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14578_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 7 - 302
Target Start/End: Complemental strand, 39396907 - 39396611
Alignment:
| Q |
7 |
gtactatgtgtggaggaagcttatgtcttggttgggtgttaattttattattcct-ataatttgttttctcattttgagtgtttgatgagggaagcgaga |
105 |
Q |
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| T |
39396907 |
gtactatgtgtggaggaagcttatgagttggttgggtgttaattttattattcctgataatttgttttctcattttgagtgtttgatgagggaagcgaga |
39396808 |
T |
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| Q |
106 |
ggaaaggcgttgcaaaagggtttctaggttaatttagcatgcggctatctaggttttgtggcgcgcgcagaatgataaggtgtttaataaagttagatga |
205 |
Q |
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| T |
39396807 |
ggaaaggcgttgcaaaagggtttctaggttaatttagcatgcggctatctaggttttgtggcgcgtgcggaatgataaggtgtttaataaagttagatga |
39396708 |
T |
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| Q |
206 |
cgaattggtagaggaagtcaaagtcctctcttggatttagaatttacacgggcttaaaacgtctccttgtctttattatgaatggtgttgggatcag |
302 |
Q |
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| T |
39396707 |
cgaattggtagaggaagtcaaagtcctctcttggatttagaatttacacgggcttaaaacgtctccttgtctttattatgaatggtgttgggatcag |
39396611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 207 - 299
Target Start/End: Complemental strand, 31024793 - 31024701
Alignment:
| Q |
207 |
gaattggtagaggaagtcaaagtcctctcttggatttagaatttacacgggcttaaaacgtctccttgtctttattatgaatggtgttgggat |
299 |
Q |
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| T |
31024793 |
gaattggtggaggaagtgaaagttctctcttagacgtggaatatacacaggcttaatacgcctcattgtctttattaaaaatggtgttgggat |
31024701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 118
Target Start/End: Complemental strand, 31025001 - 31024889
Alignment:
| Q |
7 |
gtactatgtgtggaggaagcttatgtcttggttgggtgttaattttattattcc-tataatttgttttctcattttgagtgtttgatgagggaagcgaga |
105 |
Q |
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||||||||||| || ||| |||||| || |||||||||||||||| ||||| ||||| ||| ||| |||||||| || |||| ||||||||||| |
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| T |
31025001 |
gtactatgtgtcgaaaaagattatgttatgaatgggtgttaattttataattccacataatcgttttcctcgttttgagtattggatgggggaagcgaga |
31024902 |
T |
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| Q |
106 |
ggaaaggcgttgc |
118 |
Q |
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|||||| |||||| |
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| T |
31024901 |
ggaaagccgttgc |
31024889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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