View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14578_low_13 (Length: 301)
Name: NF14578_low_13
Description: NF14578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14578_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 47928181 - 47927898
Alignment:
| Q |
1 |
gagaggcagcaagtggtcgatttggggccgcatgttacatgggtagtgtgagaattaaagattattcacaagctcttaagtatccatcatttgtaagtac |
100 |
Q |
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| T |
47928181 |
gagatgcagcaagtggtcgatttggggccgcatgttacatgggtagtgtgagaattaaagattattcacaagctcttaagtatccatcatttgtaagtac |
47928082 |
T |
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| Q |
101 |
acatgctgcagaaccatattgttacagtgccctcaatgatgctccatatggaaaagatcctgtattctactttggtggagctggaagaaaccctccttta |
200 |
Q |
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| T |
47928081 |
acatgctgcagaaccatattgttacagtgccctcaatgacgctccatatggaaaagatcctgtattctactttggaggagctggaagaaaccctccttta |
47927982 |
T |
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| Q |
201 |
tgtgcttgaaatcagatattgattaactatataatatataatgtgtttgatgaacaataaatatgtttcttgcaagtttacttt |
284 |
Q |
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| T |
47927981 |
tgtgcttgaaatcagatattgattaactatataatatataatgtgtttgatgaacaataaatatgtttcttgcaagtttacttt |
47927898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 20 - 185
Target Start/End: Complemental strand, 47918400 - 47918235
Alignment:
| Q |
20 |
atttggggccgcatgttacatgggtagtgtgagaattaaagattattcacaagctcttaagtatccatcatttgtaagtacacatgctgcagaaccatat |
119 |
Q |
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| T |
47918400 |
atttggggttgcatgttacatgggtggtgtgagaatcaaagataattcgcaagcacttaagtacccatcatttgtaagtacacatgctatagaaccatat |
47918301 |
T |
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| Q |
120 |
tgttacagtgccctcaatgatgctccatatggaaaagatcctgtattctactttggtggagctgga |
185 |
Q |
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| T |
47918300 |
tgttacagtgccttcaatgatgctccatatggaaaagatcctgtattctattttggaggtgctgga |
47918235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 8 - 175
Target Start/End: Complemental strand, 47935608 - 47935441
Alignment:
| Q |
8 |
agcaagtggtcgatttggggccgcatgttacatgggtagtgtgagaattaaagattattcacaagctcttaagtatccatcatttgtaagtacacatgct |
107 |
Q |
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| T |
47935608 |
agcaagtggtcgatttgggttcgcatgttacataagcaatgttagaattaaggattattcaaaagctctcaaatatccagcatatgtaactacttatgct |
47935509 |
T |
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| Q |
108 |
gcagaaccatattgttacagtgccctcaatgatgctccatatggaaaagatcctgtattctactttgg |
175 |
Q |
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| T |
47935508 |
gcagaaccatattgttacagtgccctcaatgaagctccatatggacaagatcctgtattttattttgg |
47935441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 47946757 - 47946590
Alignment:
| Q |
1 |
gagaggcagcaagtggtcgatttggggccgcatgttacatgggtagtgtgagaattaaagattattcacaagctcttaagtatccatcatttgtaagtac |
100 |
Q |
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|||| ||||||||||||||||||||| ||||||||||||| | |||||||||||| ||||||||| || |||| ||||||||| |||||||||||| |
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| T |
47946757 |
gagaagcagcaagtggtcgatttgggttcgcatgttacatgacaaatgtgagaattaaggattattcagaaactctcaagtatccacaatttgtaagtac |
47946658 |
T |
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| Q |
101 |
acatgctgcagaaccatattgttacagtgccctcaatgatgctccatatggaaaagatcctgtattct |
168 |
Q |
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| T |
47946657 |
atatgcagcagaaccttactgttacagtgccctcaacgatgttcaatatggaaaagatcctgtcttct |
47946590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 48 - 175
Target Start/End: Complemental strand, 47909206 - 47909079
Alignment:
| Q |
48 |
gtgagaattaaagattattcacaagctcttaagtatccatcatttgtaagtacacatgctgcagaaccatattgttacagtgccctcaatgatgctccat |
147 |
Q |
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| T |
47909206 |
gtgagaattaaagattactcacaagctcttaagtacccacaattcgtaaccacacatgctggagagcctgagtgttacagtgccctaaatattgctccat |
47909107 |
T |
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| Q |
148 |
atggaaaagatcctgtattctactttgg |
175 |
Q |
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|||||||||| ||||| |||| |||||| |
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| T |
47909106 |
atggaaaagaccctgtgttcttctttgg |
47909079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 241 - 284
Target Start/End: Original strand, 37431956 - 37431999
Alignment:
| Q |
241 |
atgtgtttgatgaacaataaatatgtttcttgcaagtttacttt |
284 |
Q |
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| T |
37431956 |
atgtgtttgatgaacaataaatatgtttcttgcaagtttacttt |
37431999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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