View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14578_low_15 (Length: 262)

Name: NF14578_low_15
Description: NF14578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14578_low_15
NF14578_low_15
[»] chr8 (2 HSPs)
chr8 (164-262)||(14055511-14055609)
chr8 (72-159)||(14053101-14053187)
[»] chr7 (1 HSPs)
chr7 (175-252)||(11044271-11044348)
[»] chr4 (1 HSPs)
chr4 (175-252)||(41823975-41824052)
[»] chr2 (2 HSPs)
chr2 (175-252)||(33436030-33436107)
chr2 (185-260)||(44152011-44152087)
[»] chr3 (2 HSPs)
chr3 (175-260)||(17470489-17470575)
chr3 (175-252)||(20764845-20764922)


Alignment Details
Target: chr8 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 164 - 262
Target Start/End: Original strand, 14055511 - 14055609
Alignment:
Q  164 tcgtggatattatagacacaatttattctcatacacctttgtatatctcattcattaagtggagagaagattagaggaaagaaaaagtggcttgtgtag 262  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||  |||||||||| |||||||||||||||||||||||||||    
T  14055511 tcgtggatattatagacactatttattctcatacacctttgtatacctcattcattaagaagagagaagatcagaggaaagaaaaagtggcttgtgtag 14055609  T

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Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 72 - 159
Target Start/End: Original strand, 14053101 - 14053187
Alignment:
Q  72 tatttaagaatgaatgaaaagtggaagcacgtgtctttcctcgttttctctgtatttttgtccaacatgcatcgatgaagtcattgtt 159  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  14053101 tatttaagaatgaatgaaaagtggaagcacgtgtgtttcctcgttttctct-tatttttgtccaacatgcatcgatgaagtcattgtt 14053187  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 252
Target Start/End: Complemental strand, 11044348 - 11044271
Alignment:
Q  175 atagacacaatttattctcatacacctttgtatatctcattcattaagtggagagaagattagaggaaagaaaaagtg 252  Q
    ||||||||  |||||| ||||||||||||||| | ||||| ||||| |  |||||||||| |||||||||| ||||||    
T  11044348 atagacactctttattttcatacacctttgtacacctcatgcattaggaagagagaagatgagaggaaagagaaagtg 11044271  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 252
Target Start/End: Complemental strand, 41824052 - 41823975
Alignment:
Q  175 atagacacaatttattctcatacacctttgtatatctcattcattaagtggagagaagattagaggaaagaaaaagtg 252  Q
    |||||||| ||||||||||||||||||||||| | ||||| ||||| |  |||||||||  |||| ||||| ||||||    
T  41824052 atagacaccatttattctcatacacctttgtacacctcatgcattaggaagagagaagaagagagaaaagagaaagtg 41823975  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 252
Target Start/End: Original strand, 33436030 - 33436107
Alignment:
Q  175 atagacacaatttattctcatacacctttgtatatctcattcattaagtggagagaagattagaggaaagaaaaagtg 252  Q
    ||||||||  |||||||||||||||| ||||| | ||||| ||||| |  |||||||||| |||||||||| ||||||    
T  33436030 atagacaccttttattctcatacacccttgtacacctcatgcattaggaagagagaagatgagaggaaagagaaagtg 33436107  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 260
Target Start/End: Complemental strand, 44152087 - 44152011
Alignment:
Q  185 tttattctcatacacctttgtatatctcattcattaagtggagagaagattagaggaaagaaaaagtg-gcttgtgt 260  Q
    ||||||| |||||||| ||||||||||||| ||||| |  |||||||||  ||| |||||| |||||| ||||||||    
T  44152087 tttattcgcatacacccttgtatatctcatgcattaggaagagagaagaggagatgaaagagaaagtgtgcttgtgt 44152011  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 260
Target Start/End: Complemental strand, 17470575 - 17470489
Alignment:
Q  175 atagacacaatttattctcatacacctttgtatatctcattcattaagtggagagaagattagaggaaagaaaaagtg-gcttgtgt 260  Q
    |||||||| |||||||||||||||  |||||| ||| ||| ||||| |  |||||||||| |||| ||||| |||||| ||||||||    
T  17470575 atagacaccatttattctcatacatatttgtacatcccatgcattaggaagagagaagatgagagaaaagagaaagtgtgcttgtgt 17470489  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 252
Target Start/End: Original strand, 20764845 - 20764922
Alignment:
Q  175 atagacacaatttattctcatacacctttgtatatctcattcattaagtggagagaagattagaggaaagaaaaagtg 252  Q
    |||||||| ||||||||||||||||| ||||| | | ||| ||||| |  |||||||||| |||| ||||| ||||||    
T  20764845 atagacaccatttattctcatacacccttgtacaccccatacattaggaagagagaagatgagagaaaagagaaagtg 20764922  T

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