View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14578_low_2 (Length: 482)
Name: NF14578_low_2
Description: NF14578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14578_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 108; Significance: 5e-54; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 289 - 416
Target Start/End: Original strand, 43683956 - 43684082
Alignment:
| Q |
289 |
tattggatgaaattcatatgaatatcaaactttaaaaatgaacttagtatataatttgggaaatgttgcatctcacgaagcaatataatgcgacaggatc |
388 |
Q |
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| T |
43683956 |
tattggatgaaattcatatgagtatcacactttaaaaatgaact-agtatataatttgagaaatgttgcatctcacgaagcaatataatgcgacaggatc |
43684054 |
T |
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| Q |
389 |
acgacacacacaaatatggatgtaggac |
416 |
Q |
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| T |
43684055 |
acgacacacacaaatatggatgtaggac |
43684082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 52 - 156
Target Start/End: Original strand, 43683733 - 43683837
Alignment:
| Q |
52 |
agatggacatcatcataaggtacgaatatgtgcgccatgtttctattgattgtgatctgttactcccaaaatgtaatttttacattcgaacccgattttt |
151 |
Q |
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| T |
43683733 |
agatggacataaccataaggtacgaatatgtgcgccatgtttctattgattgtgatctgttactcccaaaatgtaatttttacattcgaacccgattttt |
43683832 |
T |
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| Q |
152 |
caatg |
156 |
Q |
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| T |
43683833 |
caatg |
43683837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 250
Target Start/End: Original strand, 43683897 - 43683931
Alignment:
| Q |
216 |
tgatgggttttagccatttaggaatactagctata |
250 |
Q |
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| T |
43683897 |
tgatgggttttagccttttaggaatactagctata |
43683931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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