View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14578_low_22 (Length: 228)
Name: NF14578_low_22
Description: NF14578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14578_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 500081 - 499860
Alignment:
| Q |
1 |
cattgcgttgtctattgtttcattgtgtatgcctctcacgtagttatannnnnnngtcgagaaactggtgcattaagtcaaacaattgatcgtggaacca |
100 |
Q |
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| T |
500081 |
cattgcgttgtctattgtttcattgtgtatgcctctcacctagttatatttttttgtcgagaaactggtgcattaagtcaaacaattgatcgtcgaagca |
499982 |
T |
|
| Q |
101 |
gtgtaataaattttattctctcctctacgatgttcaacatacccaccatattagaggtatgcctcggttttcttttcttgttgcttagttgtgtcatggt |
200 |
Q |
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| T |
499981 |
gtgtaataaattttattctctcctctacgttgttcaacatacccaccatattagaggtatgcctcagttttcttttcttgttgcttagttgtgtcatgct |
499882 |
T |
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| Q |
201 |
ttcaactagtgtagatcattta |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
499881 |
ttcaactagtgtagatcattta |
499860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 32329520 - 32329296
Alignment:
| Q |
1 |
cattgcgttgtctattgtttcattgtgtatgcctctcacgtagttatannnnnnngtcgagaaactggtgcattaagtcaaacaattgatcgtggaacca |
100 |
Q |
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| T |
32329520 |
cattgtgttgtctattgtttcattgtgtatgcctctcacctagttattttttttagtcgagaaactggtgcattaagtcgaacaattgatcgtggtagcg |
32329421 |
T |
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| Q |
101 |
gtgtaataaattttattctctcctctacgatgttcaaca---tacccaccatattagaggtatgcctcggttttcttttcttgttgcttagttgtgtcat |
197 |
Q |
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| T |
32329420 |
gtgcaataaattttattctctcctctacgttgttcaacatagtacccaccatattagaggtatgcctcagttttcttttcatgttgcttagttgagtcac |
32329321 |
T |
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| Q |
198 |
ggtttcaactagtgtagatcattta |
222 |
Q |
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| T |
32329320 |
gctttcaactagtgtagaccattta |
32329296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 56 - 221
Target Start/End: Complemental strand, 32342958 - 32342792
Alignment:
| Q |
56 |
gtcgagaaactggtgcattaagtcaaacaattgatcgtggaaccagtgtaataaattttattctctcctctacgatgttcaa---catacccaccatatt |
152 |
Q |
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|||||||||||||||||||||||| || |||||||||||| | ||| ||||||||| ||||||||| ||| | ||||||| |||| |||||| | |
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| T |
32342958 |
gtcgagaaactggtgcattaagtcgaataattgatcgtggtagtcgtgcaataaatttcattctctccgctatggtgttcaatgtactacctaccataat |
32342859 |
T |
|
| Q |
153 |
agaggtatgcctcggttttcttttcttgttgcttagttgtgtcatggtttcaactagtgtagatcattt |
221 |
Q |
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||||||||| ||| |||| |||||||||| ||||| || ||||| ||| || ||||||||||||| |
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| T |
32342858 |
agaggtatgtctcagttt--ttttcttgtttcttaggtgactcatgtttttcccttgtgtagatcattt |
32342792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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