View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14578_low_24 (Length: 204)

Name: NF14578_low_24
Description: NF14578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14578_low_24
NF14578_low_24
[»] chr7 (1 HSPs)
chr7 (46-204)||(1863363-1863521)
[»] chr1 (2 HSPs)
chr1 (112-185)||(14864456-14864529)
chr1 (2-36)||(26089571-26089605)
[»] chr8 (2 HSPs)
chr8 (1-37)||(14124386-14124422)
chr8 (2-37)||(30806039-30806074)
[»] chr6 (2 HSPs)
chr6 (1-37)||(18053560-18053596)
chr6 (2-37)||(13865858-13865893)
[»] chr2 (2 HSPs)
chr2 (2-36)||(36911346-36911380)
chr2 (2-43)||(30712215-30712256)
[»] scaffold0356 (1 HSPs)
scaffold0356 (97-170)||(12662-12735)
[»] chr5 (1 HSPs)
chr5 (2-42)||(18933486-18933526)
[»] chr4 (1 HSPs)
chr4 (1-37)||(34293278-34293314)


Alignment Details
Target: chr7 (Bit Score: 127; Significance: 9e-66; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 46 - 204
Target Start/End: Complemental strand, 1863521 - 1863363
Alignment:
Q  46 tggaggaattgcgtccctccctctcactctttcatcttctggcgtttgtttcatggaaagatgtcaactgatgagaacctccgcgctcggggttgtgtta 145  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||| ||||||||| |||||    
T  1863521 tggaggaattgcgtccctccttctcactctttcatcttctagcgtttgtttcatggaaagatgccgactgatgagaacctccgcactcggggttttgtta 1863422  T
Q  146 tagtttcagtttgttgcttttgtttaatcactgatgaaacctcagagcatttgttcctc 204  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1863421 tagtctcagtatgttgcttttgtttaatcactgatgaaacctcagagcatttgttcctc 1863363  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 185
Target Start/End: Original strand, 14864456 - 14864529
Alignment:
Q  112 actgatgagaacctccgcgctcggggttgtgttatagtttcagtttgttgcttttgtttaatcactgatgaaac 185  Q
    |||||||||||||||||  | ||||||||||| |||||||| | |||||||||||| |||| |||  |||||||    
T  14864456 actgatgagaacctccgtacgcggggttgtgtaatagtttctgcttgttgcttttgcttaaacacaaatgaaac 14864529  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 26089571 - 26089605
Alignment:
Q  2 aaacaatattttgaatgatgaaagtgagtgtaaat 36  Q
    ||||||||||| |||||||||||||||||||||||    
T  26089571 aaacaatatttagaatgatgaaagtgagtgtaaat 26089605  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 14124386 - 14124422
Alignment:
Q  1 aaaacaatattttgaatgatgaaagtgagtgtaaatt 37  Q
    |||||||||||| ||||||||||||||||||||||||    
T  14124386 aaaacaatatttggaatgatgaaagtgagtgtaaatt 14124422  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 2 - 37
Target Start/End: Complemental strand, 30806074 - 30806039
Alignment:
Q  2 aaacaatattttgaatgatgaaagtgagtgtaaatt 37  Q
    ||||||||||| ||||||||||||||||||||||||    
T  30806074 aaacaatatttggaatgatgaaagtgagtgtaaatt 30806039  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 18053560 - 18053596
Alignment:
Q  1 aaaacaatattttgaatgatgaaagtgagtgtaaatt 37  Q
    |||||||||||| ||||||||||||||||||||||||    
T  18053560 aaaacaatatttggaatgatgaaagtgagtgtaaatt 18053596  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 2 - 37
Target Start/End: Complemental strand, 13865893 - 13865858
Alignment:
Q  2 aaacaatattttgaatgatgaaagtgagtgtaaatt 37  Q
    ||||||||||| ||||||||||||||||||||||||    
T  13865893 aaacaatatttagaatgatgaaagtgagtgtaaatt 13865858  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 36911380 - 36911346
Alignment:
Q  2 aaacaatattttgaatgatgaaagtgagtgtaaat 36  Q
    |||||||||||||||||||||||||| ||||||||    
T  36911380 aaacaatattttgaatgatgaaagtgggtgtaaat 36911346  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 30712256 - 30712215
Alignment:
Q  2 aaacaatattttgaatgatgaaagtgagtgtaaattgatgaa 43  Q
    |||||| |||||||||||||||| |||||||||||| |||||    
T  30712256 aaacaacattttgaatgatgaaaatgagtgtaaattaatgaa 30712215  T

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Target: scaffold0356 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0356
Description:

Target: scaffold0356; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 97 - 170
Target Start/End: Original strand, 12662 - 12735
Alignment:
Q  97 catggaaagatgtcaactgatgagaacctccgcgctcggggttgtgttatagtttcagtttgttgcttttgttt 170  Q
    ||||| |||||| | || ||||| ||||||||  ||  ||||||||||||||| || |||||||||||||||||    
T  12662 catggtaagatgcccacggatgaaaacctccggactaagggttgtgttatagtctctgtttgttgcttttgttt 12735  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 18933486 - 18933526
Alignment:
Q  2 aaacaatattttgaatgatgaaagtgagtgtaaattgatga 42  Q
    |||||||||||  ||||||||||||||||||||||| ||||    
T  18933486 aaacaatatttaaaatgatgaaagtgagtgtaaattaatga 18933526  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 34293314 - 34293278
Alignment:
Q  1 aaaacaatattttgaatgatgaaagtgagtgtaaatt 37  Q
    ||||||||||||||||||||||||||| ||| |||||    
T  34293314 aaaacaatattttgaatgatgaaagtgggtgaaaatt 34293278  T

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