View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14578_low_3 (Length: 446)

Name: NF14578_low_3
Description: NF14578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14578_low_3
NF14578_low_3
[»] chr1 (17 HSPs)
chr1 (204-445)||(1674364-1674605)
chr1 (1-92)||(1674161-1674251)
chr1 (203-282)||(11237705-11237784)
chr1 (361-446)||(40518969-40519054)
chr1 (361-446)||(30280261-30280346)
chr1 (358-430)||(52957493-52957565)
chr1 (203-278)||(23697528-23697603)
chr1 (356-441)||(36319720-36319805)
chr1 (203-267)||(31622889-31622953)
chr1 (356-441)||(11237830-11237916)
chr1 (206-278)||(2656149-2656219)
chr1 (356-441)||(13254509-13254594)
chr1 (402-446)||(23699198-23699242)
chr1 (358-441)||(4395798-4395881)
chr1 (356-419)||(19269961-19270024)
chr1 (399-440)||(10384085-10384126)
chr1 (203-243)||(786691-786731)
[»] chr6 (8 HSPs)
chr6 (203-282)||(7972369-7972448)
chr6 (363-445)||(14093522-14093604)
chr6 (203-279)||(21527031-21527107)
chr6 (356-441)||(9353342-9353424)
chr6 (356-441)||(2437580-2437665)
chr6 (372-441)||(23410740-23410809)
chr6 (356-436)||(8049436-8049516)
chr6 (356-441)||(25056753-25056838)
[»] chr4 (9 HSPs)
chr4 (203-280)||(24538014-24538091)
chr4 (203-280)||(38433952-38434029)
chr4 (203-278)||(37371135-37371210)
chr4 (356-441)||(49263246-49263331)
chr4 (356-440)||(54982502-54982586)
chr4 (356-438)||(38044582-38044664)
chr4 (206-278)||(45635034-45635104)
chr4 (204-234)||(19443154-19443184)
chr4 (203-232)||(49263547-49263576)
[»] scaffold0006 (2 HSPs)
scaffold0006 (203-282)||(46027-46106)
scaffold0006 (231-282)||(46337-46388)
[»] chr8 (14 HSPs)
chr8 (203-278)||(9455518-9455593)
chr8 (361-441)||(1256445-1256525)
chr8 (203-268)||(2742651-2742716)
chr8 (356-441)||(34146459-34146544)
chr8 (359-441)||(34039146-34039228)
chr8 (203-282)||(3443431-3443510)
chr8 (356-441)||(5871029-5871110)
chr8 (356-446)||(3741903-3741993)
chr8 (407-445)||(11087382-11087420)
chr8 (361-446)||(36682791-36682876)
chr8 (398-437)||(1358671-1358710)
chr8 (399-430)||(14896877-14896908)
chr8 (398-445)||(27231918-27231965)
chr8 (203-234)||(34146749-34146780)
[»] chr7 (13 HSPs)
chr7 (203-278)||(4962661-4962736)
chr7 (203-282)||(24393807-24393886)
chr7 (203-282)||(25290903-25290982)
chr7 (204-278)||(4678815-4678889)
chr7 (203-278)||(39434384-39434459)
chr7 (203-276)||(46671746-46671819)
chr7 (357-441)||(4567566-4567650)
chr7 (203-279)||(15643588-15643664)
chr7 (356-441)||(12394395-12394480)
chr7 (361-446)||(39427633-39427718)
chr7 (203-275)||(14771141-14771213)
chr7 (203-275)||(15221593-15221665)
chr7 (361-446)||(29664531-29664616)
[»] chr3 (15 HSPs)
chr3 (204-278)||(25841574-25841648)
chr3 (210-282)||(13779099-13779171)
chr3 (361-446)||(38750844-38750929)
chr3 (203-274)||(21959434-21959505)
chr3 (399-445)||(6749237-6749283)
chr3 (358-440)||(21934281-21934363)
chr3 (399-443)||(6472520-6472564)
chr3 (210-282)||(7259419-7259490)
chr3 (387-441)||(376000-376054)
chr3 (362-446)||(21915696-21915780)
chr3 (399-442)||(6512349-6512392)
chr3 (356-446)||(2599302-2599392)
chr3 (356-438)||(34668936-34669018)
chr3 (360-437)||(45759678-45759755)
chr3 (202-234)||(21916039-21916071)
[»] scaffold1130 (1 HSPs)
scaffold1130 (206-282)||(661-737)
[»] chr2 (19 HSPs)
chr2 (203-320)||(4959089-4959206)
chr2 (202-282)||(25965360-25965440)
chr2 (203-280)||(12412896-12412973)
chr2 (203-280)||(12424956-12425033)
chr2 (356-436)||(41541312-41541392)
chr2 (366-441)||(20171192-20171267)
chr2 (203-278)||(27746920-27746995)
chr2 (203-281)||(34424488-34424566)
chr2 (356-445)||(16806381-16806470)
chr2 (356-445)||(16845662-16845751)
chr2 (356-441)||(45273165-45273250)
chr2 (210-265)||(7485813-7485868)
chr2 (362-441)||(7486062-7486141)
chr2 (358-445)||(33024511-33024598)
chr2 (356-430)||(21252844-21252918)
chr2 (401-437)||(4316914-4316950)
chr2 (358-441)||(15507714-15507797)
chr2 (398-441)||(25714148-25714191)
chr2 (398-441)||(36243811-36243854)
[»] chr5 (16 HSPs)
chr5 (363-446)||(249279-249362)
chr5 (205-280)||(16365999-16366074)
chr5 (203-278)||(20202119-20202194)
chr5 (203-282)||(36059662-36059741)
chr5 (203-282)||(17558249-17558328)
chr5 (359-445)||(8544489-8544575)
chr5 (359-437)||(39585612-39585690)
chr5 (356-445)||(36437096-36437185)
chr5 (356-441)||(17201657-17201741)
chr5 (356-441)||(28620304-28620389)
chr5 (205-282)||(32717715-32717791)
chr5 (361-446)||(43346429-43346514)
chr5 (356-439)||(12436484-12436567)
chr5 (203-257)||(14655282-14655335)
chr5 (358-436)||(17200330-17200407)
chr5 (369-441)||(32474449-32474521)
[»] scaffold0005 (2 HSPs)
scaffold0005 (359-441)||(256995-257077)
scaffold0005 (203-268)||(271973-272038)
[»] scaffold0097 (1 HSPs)
scaffold0097 (203-282)||(48596-48674)
[»] scaffold0841 (1 HSPs)
scaffold0841 (398-441)||(4472-4515)


Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 204 - 445
Target Start/End: Original strand, 1674364 - 1674605
Alignment:
Q  204 acacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttcttcaacaaattcctannnnnnngcacgttttatctt 303  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       || |||||||||||    
T  1674364 acacattttatcttttcaataaatttaatatctaacaaacggttgttagttactactctctttcttcaacaaattcctatttttttgcgcgttttatctt 1674463  T
Q  304 tatgtcataacaaacaaactttattttaaatcaaaatccatcaatactattgatgagtcttcaactatttctccattttcacctatcatcaacggttcca 403  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  1674464 tatgtcataacaaacaaactttattttaaatcaaaatccattagtactattgacgagtcttcaactatttctccattttcacctatcatcaacggttcca 1674563  T
Q  404 atgagtcttccactctttcttccttttaaacattcatgaagt 445  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  1674564 atgagtcttccactctttcttccttttaaacattcatgaagt 1674605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 1674161 - 1674251
Alignment:
Q  1 ctactagattagttcatctctctttcaaatttgcaaatactagcaataaaggaacagttggatcaacatcttgcaatttactccctccgttc 92  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  1674161 ctactagattagttcatctctctttcaaatt-gcaaatactagcaataaaggaacaattggatcaacatcttgcaatttactccctccgttc 1674251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 203 - 282
Target Start/End: Original strand, 11237705 - 11237784
Alignment:
Q  203 cacacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttcttcaacaaattccta 282  Q
    |||||||||||||||||||||||||||||||| |||| |||  ||||||||||||||||||||||| |||||||||||||    
T  11237705 cacacattttatctttccaataaatttaatatgtaacgaacaattgttagttactactctctttctccaacaaattccta 11237784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 361 - 446
Target Start/End: Original strand, 40518969 - 40519054
Alignment:
Q  361 tcttcaactatttctccattttcacctatcatcaacggttccaatgagtcttccactctttcttccttttaaacattcatgaagtt 446  Q
    |||||||||| |||||| | |||||||  ||||| |||||||||||||||||||||| |||||||||||| |||||||||| ||||    
T  40518969 tcttcaactacttctccctcttcaccttccatcagcggttccaatgagtcttccactgtttcttccttttgaacattcatgcagtt 40519054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 361 - 446
Target Start/End: Complemental strand, 30280346 - 30280261
Alignment:
Q  361 tcttcaactatttctccattttcacctatcatcaacggttccaatgagtcttccactctttcttccttttaaacattcatgaagtt 446  Q
    |||||||||| |||||| | |||||||  ||||| | |||||||||||||||||||| |||||||||||| |||||||||| ||||    
T  30280346 tcttcaactacttctccctcttcaccttccatcagcagttccaatgagtcttccactatttcttccttttcaacattcatggagtt 30280261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 358 - 430
Target Start/End: Complemental strand, 52957565 - 52957493
Alignment:
Q  358 gagtcttcaactatttctccattttcacctatcatcaacggttccaatgagtcttccactctttcttcctttt 430  Q
    |||||||||||||||||| ||| |||||||  |||||||  ||||||||||||||||||||||||||| ||||    
T  52957565 gagtcttcaactatttcttcatcttcacctcccatcaaccattccaatgagtcttccactctttcttcttttt 52957493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 203 - 278
Target Start/End: Original strand, 23697528 - 23697603
Alignment:
Q  203 cacacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttcttcaacaaatt 278  Q
    |||||| ||||||||||||||||||||||||| ||| ||||  ||||||| || |||||| ||||| |||||||||    
T  23697528 cacacactttatctttccaataaatttaatatgtaagaaacaattgttagctattactctatttctccaacaaatt 23697603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 356 - 441
Target Start/End: Original strand, 36319720 - 36319805
Alignment:
Q  356 atgagtcttcaactatttctccattttcacctatcatcaacggttccaatgagtcttccactctttcttccttttaaacattcatg 441  Q
    |||||| ||||||||||||||  | ||||||| |||||| | ||||||| |||| ||| ||| |||||| ||||||||||||||||    
T  36319720 atgagttttcaactatttctctctcttcacctctcatcagcagttccaacgagtattctactttttctttcttttaaacattcatg 36319805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 203 - 267
Target Start/End: Original strand, 31622889 - 31622953
Alignment:
Q  203 cacacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttc 267  Q
    |||||| ||||||||| ||||||||||||||| |||| |||  ||||||||||||||| ||||||    
T  31622889 cacacactttatctttacaataaatttaatatgtaaccaacaattgttagttactactatctttc 31622953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 441
Target Start/End: Original strand, 11237830 - 11237916
Alignment:
Q  356 atgagtcttcaactatttctccattttcacctatcatcaacggttccaatg-agtcttccactctttcttccttttaaacattcatg 441  Q
    ||||||||||||||| |||||||| |||| ||  ||||| | ||||||||| ||| ||| |||||||||| ||||| ||||||||||    
T  11237830 atgagtcttcaactacttctccatcttcagctcccatcagcagttccaatgaagttttcgactctttctttcttttgaacattcatg 11237916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 206 - 278
Target Start/End: Complemental strand, 2656219 - 2656149
Alignment:
Q  206 acattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttcttcaacaaatt 278  Q
    |||||| ||||||| ||||||||||||||   ||||||  ||||||||||||||||||||| | |||||||||    
T  2656219 acatttgatctttcaaataaatttaatatg--acaaacaattgttagttactactctctttttccaacaaatt 2656149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 441
Target Start/End: Original strand, 13254509 - 13254594
Alignment:
Q  356 atgagtcttcaactatttctccattttcacctatcatcaacggttccaatgagtcttccactctttcttccttttaaacattcatg 441  Q
    ||||||||||||||||| |||  | ||||||| |||||| |  |||||| |||||||| ||| ||||||||||||  |||||||||    
T  13254509 atgagtcttcaactattgctcactcttcacctctcatcagcaattccaacgagtcttctactttttcttccttttggacattcatg 13254594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 402 - 446
Target Start/End: Original strand, 23699198 - 23699242
Alignment:
Q  402 caatgagtcttccactctttcttccttttaaacattcatgaagtt 446  Q
    |||| |||||||||||||||||||||||| |||||||||| ||||    
T  23699198 caattagtcttccactctttcttccttttgaacattcatggagtt 23699242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 441
Target Start/End: Original strand, 4395798 - 4395881
Alignment:
Q  358 gagtcttcaactatttctccattttcacctatcatcaacggttccaatgagtcttccactctttcttccttttaaacattcatg 441  Q
    ||||||||||||||||||   | |||||||  ||||| |  |||||||||||||| |||||||| ||| |||| ||||||||||    
T  4395798 gagtcttcaactatttctttctattcacctcccatcatccattccaatgagtctttcactcttttttcgttttgaacattcatg 4395881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 419
Target Start/End: Complemental strand, 19270024 - 19269961
Alignment:
Q  356 atgagtcttcaactatttctccattttcacctatcatcaacggttccaatgagtcttccactct 419  Q
    |||||||||||||||||||||| | |||||||  ||||| | |||| | |||||||||||||||    
T  19270024 atgagtcttcaactatttctccgtcttcacctcccatcagcagttctagtgagtcttccactct 19269961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 440
Target Start/End: Original strand, 10384085 - 10384126
Alignment:
Q  399 ttccaatgagtcttccactctttcttccttttaaacattcat 440  Q
    ||||||||||||||||| ||||||||| |||| |||||||||    
T  10384085 ttccaatgagtcttccattctttcttctttttgaacattcat 10384126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 786691 - 786731
Alignment:
Q  203 cacacattttatctttccaataaatttaatatctaacaaac 243  Q
    |||||| |||||||||| |||||||||||||| ||||||||    
T  786691 cacacaatttatctttcaaataaatttaatatgtaacaaac 786731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 203 - 282
Target Start/End: Original strand, 7972369 - 7972448
Alignment:
Q  203 cacacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttcttcaacaaattccta 282  Q
    |||||||||||||||||||||||||||||||| ||||||||  ||||| ||||||||||||||||| |||||||||||||    
T  7972369 cacacattttatctttccaataaatttaatatgtaacaaaccattgttggttactactctctttctccaacaaattccta 7972448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 363 - 445
Target Start/End: Original strand, 14093522 - 14093604
Alignment:
Q  363 ttcaactatttctccattttcacctatcatcaacggttccaatgagtcttccactctttcttccttttaaacattcatgaagt 445  Q
    ||||||||||||||| | ||||||| |||||| | |||||||||||||||| ||| ||||||| |||||||||||||||||||    
T  14093522 ttcaactatttctccctcttcacctctcatcatcagttccaatgagtcttctactttttcttcattttaaacattcatgaagt 14093604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 203 - 279
Target Start/End: Original strand, 21527031 - 21527107
Alignment:
Q  203 cacacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttcttcaacaaattc 279  Q
    |||||| ||||||||| ||||||||||||||| ||||||||  ||||| ||||||||||| ||||| ||||||||||    
T  21527031 cacacactttatcttttcaataaatttaatatgtaacaaacaattgttggttactactctttttctccaacaaattc 21527107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 356 - 441
Target Start/End: Complemental strand, 9353424 - 9353342
Alignment:
Q  356 atgagtcttcaactatttctccattttcacctatcatcaacggttccaatgagtcttccactctttcttccttttaaacattcatg 441  Q
    |||||||||||||||||||||| | ||||||| |||| |   ||| |||||||||||| |||||||||||||||| ||||||||||    
T  9353424 atgagtcttcaactatttctccctcttcacctctcatga---gtttcaatgagtcttctactctttcttccttttgaacattcatg 9353342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 356 - 441
Target Start/End: Original strand, 2437580 - 2437665
Alignment:
Q  356 atgagtcttcaactatttctccattttcacctatcatcaacggttccaatgagtcttccactctttcttccttttaaacattcatg 441  Q
    |||||||||||||||||||||| | ||||||| ||||||    |||||| || ||||||||| |||||||||||| ||||||||||    
T  2437580 atgagtcttcaactatttctccttcttcacctctcatcagaaattccaacgaatcttccactttttcttccttttgaacattcatg 2437665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 372 - 441
Target Start/End: Complemental strand, 23410809 - 23410740
Alignment:
Q  372 ttctccattttcacctatcatcaacggttccaatgagtcttccactctttcttccttttaaacattcatg 441  Q
    |||||| | |||||||  ||||||| | |||||||||||||| |||||||||||||||| ||||||||||    
T  23410809 ttctccctcttcacctcccatcaaccggtccaatgagtcttcgactctttcttccttttgaacattcatg 23410740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 356 - 436
Target Start/End: Complemental strand, 8049516 - 8049436
Alignment:
Q  356 atgagtcttcaactatttctccattttcacctatcatcaacggttccaatgagtcttccactctttcttccttttaaacat 436  Q
    |||||| ||||||||||  ||| | ||||||| ||||||||  |||||| |||||||||||| ||||| |||||| |||||    
T  8049516 atgagtattcaactattgttccctcttcacctctcatcaacaattccaacgagtcttccactttttctcccttttgaacat 8049436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 441
Target Start/End: Complemental strand, 25056838 - 25056753
Alignment:
Q  356 atgagtcttcaactatttctccattttcacctatcatcaacggttccaatgagtcttccactctttcttccttttaaacattcatg 441  Q
    ||||||||||||||||| || | | ||||||| ||||||||  || ||| |||||||| ||| |||||| | ||| ||||||||||    
T  25056838 atgagtcttcaactattgcttcctcttcacctctcatcaacaatttcaacgagtcttcaactttttctttcctttgaacattcatg 25056753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 203 - 280
Target Start/End: Original strand, 24538014 - 24538091
Alignment:
Q  203 cacacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttcttcaacaaattcc 280  Q
    |||||| ||||||||||||||||||||||||| ||||||||  ||||||||||||||||||||||| |||||||||||    
T  24538014 cacacactttatctttccaataaatttaatatgtaacaaacaattgttagttactactctctttctccaacaaattcc 24538091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 203 - 280
Target Start/End: Original strand, 38433952 - 38434029
Alignment:
Q  203 cacacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttcttcaacaaattcc 280  Q
    |||||| ||||||||||||||||||||||||| ||||||||  |||| |||||||||||| |||||  ||||||||||    
T  38433952 cacacactttatctttccaataaatttaatatgtaacaaacaattgtgagttactactctatttctctaacaaattcc 38434029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 203 - 278
Target Start/End: Original strand, 37371135 - 37371210
Alignment:
Q  203 cacacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttcttcaacaaatt 278  Q
    |||||| ||||||||| |||||||||||||||  |||||||  ||||||||||||||||||||| | |||||||||    
T  37371135 cacacactttatcttttcaataaatttaatatacaacaaacaattgttagttactactctctttttccaacaaatt 37371210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 356 - 441
Target Start/End: Complemental strand, 49263331 - 49263246
Alignment:
Q  356 atgagtcttcaactatttctccattttcacctatcatcaacggttccaatgagtcttccactctttcttccttttaaacattcatg 441  Q
    ||||||||||||||||| |||| | ||||||| |||||| |  |||||| |||||||||||| ||| |||| ||| ||||||||||    
T  49263331 atgagtcttcaactattgctccctcttcacctctcatcagcaattccaacgagtcttccacttttttttccatttgaacattcatg 49263246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 356 - 440
Target Start/End: Original strand, 54982502 - 54982586
Alignment:
Q  356 atgagtcttcaactatttctccattttcacctatcatcaacggttccaatgagtcttccactctttcttccttttaaacattcat 440  Q
    ||||||||||| ||||| |||| | ||||||| |||||| |   ||||| |||||||||| | ||||||||||||||||||||||    
T  54982502 atgagtcttcagctattgctccctcttcacctctcatcagcaaatccaacgagtcttccattttttcttccttttaaacattcat 54982586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 438
Target Start/End: Original strand, 38044582 - 38044664
Alignment:
Q  356 atgagtcttcaactatttctccattttcacctatcatcaacggttccaatgagtcttccactctttcttccttttaaacattc 438  Q
    ||||||||||||||||| |||||| ||||||| |||||  |  ||| || |||||||||||| ||||||| |||| |||||||    
T  38044582 atgagtcttcaactattgctccatcttcacctctcatcggcaattctaacgagtcttccactttttcttcattttgaacattc 38044664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 206 - 278
Target Start/End: Original strand, 45635034 - 45635104
Alignment:
Q  206 acattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttcttcaacaaatt 278  Q
    |||||| ||||||| ||||||||||||||   ||||||  ||||||||||||||||||||| | |||||||||    
T  45635034 acatttgatctttcaaataaatttaatatg--acaaacaattgttagttactactctctttttccaacaaatt 45635104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 204 - 234
Target Start/End: Original strand, 19443154 - 19443184
Alignment:
Q  204 acacattttatctttccaataaatttaatat 234  Q
    |||||||||||||||||||||||||||||||    
T  19443154 acacattttatctttccaataaatttaatat 19443184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 232
Target Start/End: Complemental strand, 49263576 - 49263547
Alignment:
Q  203 cacacattttatctttccaataaatttaat 232  Q
    ||||||||||||||||||||||||||||||    
T  49263576 cacacattttatctttccaataaatttaat 49263547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 203 - 282
Target Start/End: Original strand, 46027 - 46106
Alignment:
Q  203 cacacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttcttcaacaaattccta 282  Q
    |||||||||||||||||||||||||||||||| ||||||||  || ||||| |||||||||||||| |||||||||||||    
T  46027 cacacattttatctttccaataaatttaatatgtaacaaacaatttttagtgactactctctttctccaacaaattccta 46106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 282
Target Start/End: Original strand, 46337 - 46388
Alignment:
Q  231 atatctaacaaacggttgttagttactactctctttcttcaacaaattccta 282  Q
    |||| ||||||||  || |||||||||||||||||||| |||||||||||||    
T  46337 atatgtaacaaacaatttttagttactactctctttctccaacaaattccta 46388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 203 - 278
Target Start/End: Complemental strand, 9455593 - 9455518
Alignment:
Q  203 cacacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttcttcaacaaatt 278  Q
    |||||||||||| ||||||||||||||||||| ||||||||  ||||||||||||||||||||||| |||||||||    
T  9455593 cacacattttatttttccaataaatttaatatgtaacaaacaattgttagttactactctctttctccaacaaatt 9455518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 361 - 441
Target Start/End: Original strand, 1256445 - 1256525
Alignment:
Q  361 tcttcaactatttctccattttcacctatcatcaacggttccaatgagtcttccactctttcttccttttaaacattcatg 441  Q
    ||||||||||||||||| | ||||||| |||||||| |||||||||| ||||||||| |||||||||||| | ||||||||    
T  1256445 tcttcaactatttctccctcttcacctctcatcaaccgttccaatgaatcttccactttttcttccttttgagcattcatg 1256525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 203 - 268
Target Start/End: Original strand, 2742651 - 2742716
Alignment:
Q  203 cacacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttct 268  Q
    |||||||||||||||||||||||||||||||| ||||||||  |||||||||| || |||||||||    
T  2742651 cacacattttatctttccaataaatttaatatgtaacaaacaattgttagttagtagtctctttct 2742716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 356 - 441
Target Start/End: Complemental strand, 34146544 - 34146459
Alignment:
Q  356 atgagtcttcaactatttctccattttcacctatcatcaacggttccaatgagtcttccactctttcttccttttaaacattcatg 441  Q
    ||||||||||||||||||||||   ||||||| |||||| | |||| |||| |||||||||| |||||||||||| ||||||||||    
T  34146544 atgagtcttcaactatttctcccccttcacctctcatcagcagttctaatgggtcttccactatttcttccttttgaacattcatg 34146459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 359 - 441
Target Start/End: Complemental strand, 34039228 - 34039146
Alignment:
Q  359 agtcttcaactatttctccattttcacctatcatcaacggttccaatgagtcttccactctttcttccttttaaacattcatg 441  Q
    ||||||||| ||||||||||| |||||||  ||||| | |||||||||||||||| ||| |||||| ||||| ||||||||||    
T  34039228 agtcttcaagtatttctccatcttcacctcccatcagccgttccaatgagtcttctactttttctttcttttgaacattcatg 34039146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 203 - 282
Target Start/End: Original strand, 3443431 - 3443510
Alignment:
Q  203 cacacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttcttcaacaaattccta 282  Q
    |||||| ||||||| ||||||||||||||||| ||||||||  || | |||||||||||| |||||  ||||||||||||    
T  3443431 cacacactttatctatccaataaatttaatatgtaacaaacaattatgagttactactctttttctcaaacaaattccta 3443510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 356 - 441
Target Start/End: Complemental strand, 5871110 - 5871029
Alignment:
Q  356 atgagtcttcaactatttctccattttcacctatcatcaacggttccaatgagtcttccactctttcttccttttaaacattcatg 441  Q
    ||||||||| |||||||||||| | ||||||| ||||||   ||| |||||||||||||| | |||||||||||| ||||||||||    
T  5871110 atgagtctttaactatttctcc-tcttcacctctcatca---gtttcaatgagtcttccattatttcttccttttgaacattcatg 5871029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 446
Target Start/End: Complemental strand, 3741993 - 3741903
Alignment:
Q  356 atgagtcttcaactatttctccattttcacctatcatcaacggttccaatgagtcttccactctttcttccttttaaacattcatgaagtt 446  Q
    ||||||||||||||| ||| || | ||||  |  |||||||  ||| || ||||||||||||||||||||||||| |||||||||| ||||    
T  3741993 atgagtcttcaactacttccccctcttcattttccatcaacaattctaacgagtcttccactctttcttccttttgaacattcatggagtt 3741903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 407 - 445
Target Start/End: Complemental strand, 11087420 - 11087382
Alignment:
Q  407 agtcttccactctttcttccttttaaacattcatgaagt 445  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  11087420 agtcttccactttttcttccttttaaacattcatgaagt 11087382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 361 - 446
Target Start/End: Complemental strand, 36682876 - 36682791
Alignment:
Q  361 tcttcaactatttctccattttcacctatcatcaacggttccaatgagtcttccactctttcttccttttaaacattcatgaagtt 446  Q
    ||||| |||| |||||| | |||||||  ||| | | |||||||||||||||||||| ||| |||||||| |||||||||| ||||    
T  36682876 tcttcgactacttctccttcttcaccttccattagcagttccaatgagtcttccactattttttccttttgaacattcatggagtt 36682791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 398 - 437
Target Start/End: Original strand, 1358671 - 1358710
Alignment:
Q  398 gttccaatgagtcttccactctttcttccttttaaacatt 437  Q
    ||||||||||||||||| ||||||||||||||| ||||||    
T  1358671 gttccaatgagtcttccgctctttcttccttttgaacatt 1358710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 399 - 430
Target Start/End: Complemental strand, 14896908 - 14896877
Alignment:
Q  399 ttccaatgagtcttccactctttcttcctttt 430  Q
    ||||||||||||||||||||||||||||||||    
T  14896908 ttccaatgagtcttccactctttcttcctttt 14896877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 398 - 445
Target Start/End: Complemental strand, 27231965 - 27231918
Alignment:
Q  398 gttccaatgagtcttccactctttcttccttttaaacattcatgaagt 445  Q
    |||||||||||||||||||| || ||| ||||| ||||||||||||||    
T  27231965 gttccaatgagtcttccacttttactttcttttgaacattcatgaagt 27231918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 234
Target Start/End: Complemental strand, 34146780 - 34146749
Alignment:
Q  203 cacacattttatctttccaataaatttaatat 234  Q
    ||||||||||||||||||||||||||||||||    
T  34146780 cacacattttatctttccaataaatttaatat 34146749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 203 - 278
Target Start/End: Original strand, 4962661 - 4962736
Alignment:
Q  203 cacacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttcttcaacaaatt 278  Q
    |||||| ||||||||||||||||||||||||| ||||||||  ||||||||||||||||||||||| |||||||||    
T  4962661 cacacactttatctttccaataaatttaatatgtaacaaacaattgttagttactactctctttctccaacaaatt 4962736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 203 - 282
Target Start/End: Original strand, 24393807 - 24393886
Alignment:
Q  203 cacacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttcttcaacaaattccta 282  Q
    |||||| ||||||||||||||||||||||||| ||||||||  || ||| |||||||||||||||| |||||||||||||    
T  24393807 cacacactttatctttccaataaatttaatatgtaacaaacaattattaattactactctctttctccaacaaattccta 24393886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 203 - 282
Target Start/End: Complemental strand, 25290982 - 25290903
Alignment:
Q  203 cacacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttcttcaacaaattccta 282  Q
    ||||||||||||  |||||||||||||||||| ||||||||  ||||||||||||||| || |||| |||||||||||||    
T  25290982 cacacattttatgattccaataaatttaatatgtaacaaacaattgttagttactactttccttctccaacaaattccta 25290903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 204 - 278
Target Start/End: Complemental strand, 4678889 - 4678815
Alignment:
Q  204 acacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttcttcaacaaatt 278  Q
    ||||| ||||||||||||||||||||||||| ||||||||  || |||||||||||||||||| | |||||||||    
T  4678889 acacactttatctttccaataaatttaatatgtaacaaacaattattagttactactctctttatccaacaaatt 4678815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 203 - 278
Target Start/End: Complemental strand, 39434459 - 39434384
Alignment:
Q  203 cacacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttcttcaacaaatt 278  Q
    |||||| ||||||||||||||||||||||||| |||||||   || |||||| ||||||||||||| |||||||||    
T  39434459 cacacactttatctttccaataaatttaatatgtaacaaataatttttagttgctactctctttctccaacaaatt 39434384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 203 - 276
Target Start/End: Original strand, 46671746 - 46671819
Alignment:
Q  203 cacacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttcttcaacaaa 276  Q
    |||||| ||||| ||||||||||||||||| | ||||||||  ||||||||||| ||||||||||| |||||||    
T  46671746 cacacactttatttttccaataaatttaatgtgtaacaaacaattgttagttacaactctctttctacaacaaa 46671819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 357 - 441
Target Start/End: Complemental strand, 4567650 - 4567566
Alignment:
Q  357 tgagtcttcaactatttctccattttcacctatcatcaacggttccaatgagtcttccactctttcttccttttaaacattcatg 441  Q
    |||||||||||||||| |||| | ||||||| |||||| |  |||||| |||||||||||  |||||||||||| ||||||||||    
T  4567650 tgagtcttcaactattgctccctcttcacctctcatcagcaattccaacgagtcttccacattttcttccttttgaacattcatg 4567566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 203 - 279
Target Start/End: Complemental strand, 15643664 - 15643588
Alignment:
Q  203 cacacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttcttcaacaaattc 279  Q
    |||||||||||||||||||||||||||||||| ||| |||   || |||||||| | ||||||||| ||||||||||    
T  15643664 cacacattttatctttccaataaatttaatatttaagaaaaaattattagttacgaatctctttctccaacaaattc 15643588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 356 - 441
Target Start/End: Complemental strand, 12394480 - 12394395
Alignment:
Q  356 atgagtcttcaactatttctccattttcacctatcatcaacggttccaatgagtcttccactctttcttccttttaaacattcatg 441  Q
    |||||||||||||||||||||| | |||| || |||||| |   | || ||||||||||||||||| |||||||| ||||||||||    
T  12394480 atgagtcttcaactatttctccctcttcaactctcatcagcaacttcattgagtcttccactcttttttccttttgaacattcatg 12394395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 361 - 446
Target Start/End: Complemental strand, 39427718 - 39427633
Alignment:
Q  361 tcttcaactatttctccattttcacctatcatcaacggttccaatgagtcttccactctttcttccttttaaacattcatgaagtt 446  Q
    |||| ||||| |||||| | |||||||  ||||| | |||||||||||||||||||| |||||| ||||| |||||||||| ||||    
T  39427718 tctttaactacttctccctcttcaccttccatcagcagttccaatgagtcttccactatttctttcttttgaacattcatggagtt 39427633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 203 - 275
Target Start/End: Original strand, 14771141 - 14771213
Alignment:
Q  203 cacacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttcttcaacaa 275  Q
    |||||| ||||||||| ||||||||| ||||| |||||||   || |||||||||||||||||||| ||||||    
T  14771141 cacacactttatcttttcaataaattaaatatgtaacaaaaaattcttagttactactctctttctccaacaa 14771213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 203 - 275
Target Start/End: Original strand, 15221593 - 15221665
Alignment:
Q  203 cacacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttcttcaacaa 275  Q
    |||||| ||||||||| ||||||||| ||||| |||||||   || |||||||||||||||||||| ||||||    
T  15221593 cacacactttatcttttcaataaattaaatatgtaacaaaaaattcttagttactactctctttctccaacaa 15221665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 361 - 446
Target Start/End: Complemental strand, 29664616 - 29664531
Alignment:
Q  361 tcttcaactatttctccattttcacctatcatcaacggttccaatgagtcttccactctttcttccttttaaacattcatgaagtt 446  Q
    |||||||||| |||||  | |||||||  ||||| | |||| ||||||||||||||||||| ||| |||| |||||||||| ||||    
T  29664616 tcttcaactacttctctctcttcaccttccatcagcagttctaatgagtcttccactcttttttctttttgaacattcatggagtt 29664531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 204 - 278
Target Start/End: Original strand, 25841574 - 25841648
Alignment:
Q  204 acacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttcttcaacaaatt 278  Q
    ||||||||||||||||||||||||||||||  ||||||||  ||||||||||||||||||||||| |||||||||    
T  25841574 acacattttatctttccaataaatttaataaataacaaacaattgttagttactactctctttctccaacaaatt 25841648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 210 - 282
Target Start/End: Complemental strand, 13779171 - 13779099
Alignment:
Q  210 tttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttcttcaacaaattccta 282  Q
    ||||||||||||||||||||||||| ||||| ||  ||||||||||||||||||||||| |||||||||||||    
T  13779171 tttatctttccaataaatttaatatgtaacagacaattgttagttactactctctttctccaacaaattccta 13779099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 361 - 446
Target Start/End: Original strand, 38750844 - 38750929
Alignment:
Q  361 tcttcaactatttctccattttcacctatcatcaacggttccaatgagtcttccactctttcttccttttaaacattcatgaagtt 446  Q
    |||||||||| |||||| | |||||||  ||||| | ||| ||||||||||||||||||||||||||||| |||||||||| ||||    
T  38750844 tcttcaactacttctccctcttcaccttccatcagcagtttcaatgagtcttccactctttcttccttttgaacattcatggagtt 38750929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 203 - 274
Target Start/End: Original strand, 21959434 - 21959505
Alignment:
Q  203 cacacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttcttcaaca 274  Q
    |||||| ||||| |||| ||||||| |||||| ||||||||  |||||||||||||||||||||||||||||    
T  21959434 cacacactttatatttctaataaatataatatgtaacaaacaattgttagttactactctctttcttcaaca 21959505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 399 - 445
Target Start/End: Complemental strand, 6749283 - 6749237
Alignment:
Q  399 ttccaatgagtcttccactctttcttccttttaaacattcatgaagt 445  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||    
T  6749283 ttccaatgagtcttccactctttcttccttttgaacattcatgaagt 6749237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 358 - 440
Target Start/End: Original strand, 21934281 - 21934363
Alignment:
Q  358 gagtcttcaactatttctccattttcacctatcatcaacggttccaatgagtcttccactctttcttccttttaaacattcat 440  Q
    ||||||||||||| |||||| | |||||||  ||||||| |||||||||||||||||||| ||| ||| |||| |||||||||    
T  21934281 gagtcttcaactacttctccctcttcaccttccatcaacagttccaatgagtcttccactatttattctttttgaacattcat 21934363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 399 - 443
Target Start/End: Original strand, 6472520 - 6472564
Alignment:
Q  399 ttccaatgagtcttccactctttcttccttttaaacattcatgaa 443  Q
    |||||||||||||||||||||||||||||||| ||||||||||||    
T  6472520 ttccaatgagtcttccactctttcttccttttgaacattcatgaa 6472564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 210 - 282
Target Start/End: Original strand, 7259419 - 7259490
Alignment:
Q  210 tttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttcttcaacaaattccta 282  Q
    ||||||||||||||||| ||||||| ||||||||  ||||||||||||| ||||||||| ||||||| |||||    
T  7259419 tttatctttccaataaaattaatatgtaacaaacaattgttagttacta-tctctttctccaacaaactccta 7259490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 387 - 441
Target Start/End: Complemental strand, 376054 - 376000
Alignment:
Q  387 tatcatcaacggttccaatgagtcttccactctttcttccttttaaacattcatg 441  Q
    |||||||| | ||||||||||||||| |||||||| |||||||| ||||||||||    
T  376054 tatcatcagccgttccaatgagtctttcactctttattccttttgaacattcatg 376000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 362 - 446
Target Start/End: Complemental strand, 21915780 - 21915696
Alignment:
Q  362 cttcaactatttctccattttcacctatcatcaacggttccaatgagtcttccactctttcttccttttaaacattcatgaagtt 446  Q
    ||||||||||  || | |||||||||  ||||||| |||||||  |||||||||||| || |||||||| |||||||||| ||||    
T  21915780 cttcaactatgacttccttttcaccttccatcaacagttccaacaagtcttccactcgttattccttttgaacattcatggagtt 21915696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 399 - 442
Target Start/End: Original strand, 6512349 - 6512392
Alignment:
Q  399 ttccaatgagtcttccactctttcttccttttaaacattcatga 442  Q
    |||||||||| ||||||||||||||||||||| || ||||||||    
T  6512349 ttccaatgagccttccactctttcttccttttgaaaattcatga 6512392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 446
Target Start/End: Complemental strand, 2599392 - 2599302
Alignment:
Q  356 atgagtcttcaactatttctccattttcacctatcatcaacggttccaatgagtcttccactctttcttccttttaaacattcatgaagtt 446  Q
    ||||||||||||||||| |||  | ||||||| |||| |    |||||| |||||||||||| | |||||||||| |||||||||| ||||    
T  2599392 atgagtcttcaactattgctctctcttcacctttcattagtaattccaacgagtcttccactttctcttccttttgaacattcatggagtt 2599302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 438
Target Start/End: Complemental strand, 34669018 - 34668936
Alignment:
Q  356 atgagtcttcaactatttctccattttcacctatcatcaacggttccaatgagtcttccactctttcttccttttaaacattc 438  Q
    ||||||||||||||||| |||| | ||||||  |||||| |  || ||| |||||||||||| ||||||| |||| |||||||    
T  34669018 atgagtcttcaactattgctccctcttcacccttcatcagcaatttcaacgagtcttccactttttcttctttttgaacattc 34668936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 437
Target Start/End: Original strand, 45759678 - 45759755
Alignment:
Q  360 gtcttcaactatttctccattttcacctatcatcaacggttccaatgagtcttccactctttcttccttttaaacatt 437  Q
    ||||| |||||||||||| | ||||||| |||| |   ||| |||||||||||||||||||| ||| |||| ||||||    
T  45759678 gtctttaactatttctccctcttcacctctcattagtagtttcaatgagtcttccactctttattctttttgaacatt 45759755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 234
Target Start/End: Complemental strand, 21916071 - 21916039
Alignment:
Q  202 acacacattttatctttccaataaatttaatat 234  Q
    ||||||| |||||||||||||||||||||||||    
T  21916071 acacacactttatctttccaataaatttaatat 21916039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1130 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold1130
Description:

Target: scaffold1130; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 206 - 282
Target Start/End: Complemental strand, 737 - 661
Alignment:
Q  206 acattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttcttcaacaaattccta 282  Q
    ||||||||||||||||||||||||||||| ||||||||  || || ||||||||||||||||| |||||||||||||    
T  737 acattttatctttccaataaatttaatatgtaacaaacaattttttgttactactctctttctccaacaaattccta 661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 203 - 320
Target Start/End: Original strand, 4959089 - 4959206
Alignment:
Q  203 cacacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttcttcaacaaattcctannnnnnngcacgttttatct 302  Q
    |||||| |||||||||||| |||||||||||| |||||||   || |||||||||||||||||||| |||||||||||||       || ||||||||||    
T  4959089 cacacactttatctttccattaaatttaatatgtaacaaataattattagttactactctctttctccaacaaattcctatttttttgcgcgttttatct 4959188  T
Q  303 ttatgtcataacaaacaa 320  Q
    || | |||||||||||||    
T  4959189 ttctctcataacaaacaa 4959206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 202 - 282
Target Start/End: Original strand, 25965360 - 25965440
Alignment:
Q  202 acacacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttcttcaacaaattccta 282  Q
    ||||||| ||||||||||||||||||||||||| ||||||||  ||||||||||||||||||||||| ||| ||| |||||    
T  25965360 acacacactttatctttccaataaatttaatatgtaacaaacaattgttagttactactctctttctccaataaaatccta 25965440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 203 - 280
Target Start/End: Complemental strand, 12412973 - 12412896
Alignment:
Q  203 cacacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttcttcaacaaattcc 280  Q
    |||||| ||||||||||||||||||||||||  | ||||||  ||||||||||||||||||||||| |||||||||||    
T  12412973 cacacactttatctttccaataaatttaatacgtgacaaacaattgttagttactactctctttctccaacaaattcc 12412896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 203 - 280
Target Start/End: Complemental strand, 12425033 - 12424956
Alignment:
Q  203 cacacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttcttcaacaaattcc 280  Q
    |||||| ||||||||||||||||||||||||  | ||||||  ||||||||||||||||||||||| |||||||||||    
T  12425033 cacacactttatctttccaataaatttaatacgtgacaaacaattgttagttactactctctttctccaacaaattcc 12424956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 356 - 436
Target Start/End: Complemental strand, 41541392 - 41541312
Alignment:
Q  356 atgagtcttcaactatttctccattttcacctatcatcaacggttccaatgagtcttccactctttcttccttttaaacat 436  Q
    |||||||||||||||||||||| ||||||||| ||||||   ||||||||||||||| ||||||||||| ||||| |||||    
T  41541392 atgagtcttcaactatttctcccttttcacctctcatcagtcgttccaatgagtcttacactctttctttcttttgaacat 41541312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 366 - 441
Target Start/End: Original strand, 20171192 - 20171267
Alignment:
Q  366 aactatttctccattttcacctatcatcaacggttccaatgagtcttccactctttcttccttttaaacattcatg 441  Q
    |||||||||||| ||||||||| | ||||   ||||||||||||||||||||||||||||||||| ||||||||||    
T  20171192 aactatttctcccttttcacctcttatcagtcgttccaatgagtcttccactctttcttccttttgaacattcatg 20171267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 203 - 278
Target Start/End: Complemental strand, 27746995 - 27746920
Alignment:
Q  203 cacacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttcttcaacaaatt 278  Q
    |||||| ||||| ||||||||||||||||||| ||||||||  ||||||||||||||||||||||| ||| |||||    
T  27746995 cacacactttatttttccaataaatttaatatttaacaaacaattgttagttactactctctttctccaataaatt 27746920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 203 - 281
Target Start/End: Original strand, 34424488 - 34424566
Alignment:
Q  203 cacacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttcttcaacaaattcct 281  Q
    |||||| ||||||||||||||||||||||||| ||||||||  ||||||||||||||||| ||||  | ||||||||||    
T  34424488 cacacactttatctttccaataaatttaatatgtaacaaacaattgttagttactactctatttccccgacaaattcct 34424566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 356 - 445
Target Start/End: Original strand, 16806381 - 16806470
Alignment:
Q  356 atgagtcttcaactatttctccattttcacctatcatcaacggttccaatgagtcttccactctttcttccttttaaacattcatgaagt 445  Q
    ||||||||||||||||| |||| | |||| || ||||||||  |||||| |||||||||||| |||||||||||| |||||||| |||||    
T  16806381 atgagtcttcaactattgctccctcttcatctctcatcaacaattccaacgagtcttccactttttcttccttttgaacattcacgaagt 16806470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 356 - 445
Target Start/End: Original strand, 16845662 - 16845751
Alignment:
Q  356 atgagtcttcaactatttctccattttcacctatcatcaacggttccaatgagtcttccactctttcttccttttaaacattcatgaagt 445  Q
    ||||||||||||||||| |||| | |||| || ||||||||  |||||| |||||||||||| |||||||||||| |||||||| |||||    
T  16845662 atgagtcttcaactattgctccctcttcatctctcatcaacaattccaacgagtcttccactttttcttccttttgaacattcacgaagt 16845751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 356 - 441
Target Start/End: Original strand, 45273165 - 45273250
Alignment:
Q  356 atgagtcttcaactatttctccattttcacctatcatcaacggttccaatgagtcttccactctttcttccttttaaacattcatg 441  Q
    ||||||||||||||||| |||||| || || | ||||||||  ||||||||||||||||| | |||||||||||| ||||||||||    
T  45273165 atgagtcttcaactattgctccatctttacatctcatcaacacttccaatgagtcttccattttttcttccttttgaacattcatg 45273250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 210 - 265
Target Start/End: Original strand, 7485813 - 7485868
Alignment:
Q  210 tttatctttccaataaatttaatatctaacaaacggttgttagttactactctctt 265  Q
    ||||||||| ||||||||||| ||| ||||||||  ||||||||||||||||||||    
T  7485813 tttatctttgcaataaatttagtatgtaacaaacaattgttagttactactctctt 7485868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 362 - 441
Target Start/End: Original strand, 7486062 - 7486141
Alignment:
Q  362 cttcaactatttctccattttcacctatcatcaacggttccaatgagtcttccactctttcttccttttaaacattcatg 441  Q
    |||||||| ||||||  | |||||||  ||||||| |||| |||||||||||||||||||||| | ||| ||||||||||    
T  7486062 cttcaactctttctcactcttcacctcccatcaacagttctaatgagtcttccactctttctttcgtttgaacattcatg 7486141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 358 - 445
Target Start/End: Complemental strand, 33024598 - 33024511
Alignment:
Q  358 gagtcttcaactatttctccattttcacctatcatcaacggttccaatgagtcttccactctttcttccttttaaacattcatgaagt 445  Q
    |||||||||||||||| ||  | |||||||   |||| | ||||||||||| ||||||||||||||||||||| |||||  |||||||    
T  33024598 gagtcttcaactatttgtctctcttcacctccaatcagccgttccaatgagccttccactctttcttccttttgaacatatatgaagt 33024511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 430
Target Start/End: Complemental strand, 21252918 - 21252844
Alignment:
Q  356 atgagtcttcaactatttctccattttcacctatcatcaacggttccaatgagtcttccactctttcttcctttt 430  Q
    ||||||||||||||||| |||||| ||||||| |||||| |  |||||| |||||||| ||| |||||| |||||    
T  21252918 atgagtcttcaactattgctccatcttcacctctcatcagcaattccaacgagtcttcaactttttctttctttt 21252844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 401 - 437
Target Start/End: Complemental strand, 4316950 - 4316914
Alignment:
Q  401 ccaatgagtcttccactctttcttccttttaaacatt 437  Q
    |||||||||||||||||||||||||||||| ||||||    
T  4316950 ccaatgagtcttccactctttcttccttttgaacatt 4316914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 441
Target Start/End: Complemental strand, 15507797 - 15507714
Alignment:
Q  358 gagtcttcaactatttctccattttcacctatcatcaacggttccaatgagtcttccactctttcttccttttaaacattcatg 441  Q
    |||| ||||||||||||||| | ||||  |  ||||| | ||| ||||||||||| || |||||||||||||| ||||||||||    
T  15507797 gagttttcaactatttctccctcttcattttccatcagccgtttcaatgagtcttgcattctttcttccttttgaacattcatg 15507714  T

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Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 398 - 441
Target Start/End: Original strand, 25714148 - 25714191
Alignment:
Q  398 gttccaatgagtcttccactctttcttccttttaaacattcatg 441  Q
    |||| ||||| |||||||||||||||||||||| ||||||||||    
T  25714148 gttctaatgattcttccactctttcttccttttgaacattcatg 25714191  T

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Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 398 - 441
Target Start/End: Original strand, 36243811 - 36243854
Alignment:
Q  398 gttccaatgagtcttccactctttcttccttttaaacattcatg 441  Q
    ||||||||| |||||||||||||| |||||||| ||||||||||    
T  36243811 gttccaatgtgtcttccactctttattccttttgaacattcatg 36243854  T

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Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 363 - 446
Target Start/End: Original strand, 249279 - 249362
Alignment:
Q  363 ttcaactatttctccattttcacctatcatcaacggttccaatgagtcttccactctttcttccttttaaacattcatgaagtt 446  Q
    |||||||| |||||| |||||||||  ||| | | ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  249279 ttcaactacttctcccttttcaccttccatgagcagttccaatgagtcttccactctttcttccttttgaacattcatgaagtt 249362  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 205 - 280
Target Start/End: Complemental strand, 16366074 - 16365999
Alignment:
Q  205 cacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttcttcaacaaattcc 280  Q
    |||| ||||||||||||||||||||||||| ||||||||  ||||||||||||||||||||||| ||| |||||||    
T  16366074 cacactttatctttccaataaatttaatatgtaacaaacaattgttagttactactctctttctccaagaaattcc 16365999  T

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Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 203 - 278
Target Start/End: Complemental strand, 20202194 - 20202119
Alignment:
Q  203 cacacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttcttcaacaaatt 278  Q
    |||||| ||||||||| ||||||||||||||| ||||||||  ||||||||||||||||||||||| |||||||||    
T  20202194 cacacactttatcttttcaataaatttaatatgtaacaaacaattgttagttactactctctttctccaacaaatt 20202119  T

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Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 203 - 282
Target Start/End: Original strand, 36059662 - 36059741
Alignment:
Q  203 cacacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttcttcaacaaattccta 282  Q
    |||||| ||||||||||||||||||||||||| ||| ||||  |||||||||||||||| |||||| |||||||||||||    
T  36059662 cacacactttatctttccaataaatttaatatgtaagaaacaattgttagttactactcactttctccaacaaattccta 36059741  T

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Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 203 - 282
Target Start/End: Complemental strand, 17558328 - 17558249
Alignment:
Q  203 cacacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttcttcaacaaattccta 282  Q
    |||||| ||||| ||||||||||| | ||||| ||||||||  ||||||||||||||||||||||| |||||||||||||    
T  17558328 cacacactttatatttccaataaactaaatatttaacaaacaattgttagttactactctctttctccaacaaattccta 17558249  T

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Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 359 - 445
Target Start/End: Original strand, 8544489 - 8544575
Alignment:
Q  359 agtcttcaactatttctccattttcacctatcatcaacggttccaatgagtcttccactctttcttccttttaaacattcatgaagt 445  Q
    ||||||||||||||| ||  | ||||||| |||||| | ||| ||| ||||||||||||||||||||||||| ||||||||||||||    
T  8544489 agtcttcaactatttatctctcttcacctctcatcagcagtttcaacgagtcttccactctttcttccttttgaacattcatgaagt 8544575  T

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Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 359 - 437
Target Start/End: Original strand, 39585612 - 39585690
Alignment:
Q  359 agtcttcaactatttctccattttcacctatcatcaacggttccaatgagtcttccactctttcttccttttaaacatt 437  Q
    |||||||||||||| |||| | ||||||| |||||| | ||| |||||||||||||||| |||||||||||| ||||||    
T  39585612 agtcttcaactattgctccctcttcacctttcatcagcagtttcaatgagtcttccactttttcttccttttgaacatt 39585690  T

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Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 356 - 445
Target Start/End: Original strand, 36437096 - 36437185
Alignment:
Q  356 atgagtcttcaactatttctccattttcacctatcatcaacggttccaatgagtcttccactctttcttccttttaaacattcatgaagt 445  Q
    ||||||||||||||||| || ||| ||||||| |||||| |  |||||| ||| |||||||| |||||||||||| || |||||||||||    
T  36437096 atgagtcttcaactattgcttcatcttcacctctcatcagcaattccaacgagccttccactttttcttccttttgaaaattcatgaagt 36437185  T

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Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 441
Target Start/End: Complemental strand, 17201741 - 17201657
Alignment:
Q  356 atgagtcttcaactatttctccattttcacctatcatcaacggttccaatgagtcttccactctttcttccttttaaacattcatg 441  Q
    ||||||||||||||||| |||  | ||||||| ||||||||  || ||| |||||||||||| |||||| | ||||||||||||||    
T  17201741 atgagtcttcaactattgctctctcttcacctctcatcaacaatttcaacgagtcttccactttttctttc-tttaaacattcatg 17201657  T

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Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 441
Target Start/End: Complemental strand, 28620389 - 28620304
Alignment:
Q  356 atgagtcttcaactatttctccattttcacctatcatcaacggttccaatgagtcttccactctttcttccttttaaacattcatg 441  Q
    |||||| ||||| ||||||||  | ||||||| |||||||| ||||||| |||| ||| ||| || ||| ||||||||||||||||    
T  28620389 atgagttttcaattatttctctctcttcacctctcatcaacagttccaacgagtattctacttttactttcttttaaacattcatg 28620304  T

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Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 205 - 282
Target Start/End: Original strand, 32717715 - 32717791
Alignment:
Q  205 cacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttcttcaacaaattccta 282  Q
    |||| ||||| ||||  |||||||| |||| |||| |||  |||||||||||||||||||||| ||||||||||||||    
T  32717715 cacactttatttttctgataaatttgatatgtaactaacaattgttagttactactctctttc-tcaacaaattccta 32717791  T

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Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 361 - 446
Target Start/End: Original strand, 43346429 - 43346514
Alignment:
Q  361 tcttcaactatttctccattttcacctatcatcaacggttccaatgagtcttccactctttcttccttttaaacattcatgaagtt 446  Q
    |||||||||| |||||  | |||||||  ||||| | |||| ||||||||||||||||||| ||| |||| |||||||||| ||||    
T  43346429 tcttcaactacttctctctcttcaccttccatcagcagttctaatgagtcttccactcttttttctttttgaacattcatggagtt 43346514  T

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Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 439
Target Start/End: Original strand, 12436484 - 12436567
Alignment:
Q  356 atgagtcttcaactatttctccattttcacctatcatcaacggttccaatgagtcttccactctttcttccttttaaacattca 439  Q
    ||||||||||||| ||| |||| | ||||||| ||||||||  ||| || |||| ||||||| ||| |||||||| ||||||||    
T  12436484 atgagtcttcaaccattgctccctcttcacctctcatcaacaattctaacgagtgttccactttttattccttttgaacattca 12436567  T

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Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 257
Target Start/End: Complemental strand, 14655335 - 14655282
Alignment:
Q  203 cacacattttatctttccaataaatttaatatctaacaaacggttgttagttact 257  Q
    |||||| |||||||||||||||| |||||||| ||||||||  ||||||||||||    
T  14655335 cacacactttatctttccaataa-tttaatatgtaacaaacaattgttagttact 14655282  T

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Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 436
Target Start/End: Complemental strand, 17200407 - 17200330
Alignment:
Q  358 gagtcttcaactatttctccattttcacctatcatcaacggttccaatgagtcttccactctttcttccttttaaacat 436  Q
    |||||||||||||||||||| | |||||||  |||||   |||||||| | ||||||||| |||||||||||| |||||    
T  17200407 gagtcttcaactatttctccttcttcacctc-catcagtcgttccaattaatcttccactatttcttccttttgaacat 17200330  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 441
Target Start/End: Complemental strand, 32474521 - 32474449
Alignment:
Q  369 tatttctccattttcacctatcatcaacggttccaatgagtcttccactctttcttccttttaaacattcatg 441  Q
    ||||||||| | |||| || ||||| || |||| || ||||||| |||| |||||||||||| ||||||||||    
T  32474521 tatttctccctcttcatctctcatccacagttctaacgagtctttcactttttcttccttttgaacattcatg 32474449  T

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Target: scaffold0005 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 359 - 441
Target Start/End: Complemental strand, 257077 - 256995
Alignment:
Q  359 agtcttcaactatttctccattttcacctatcatcaacggttccaatgagtcttccactctttcttccttttaaacattcatg 441  Q
    |||||||||||||| |||| | ||||||| ||||||||  ||||||  ||||||||||| ||||||| |||| ||||||||||    
T  257077 agtcttcaactattgctccctcttcacctctcatcaacaattccaacaagtcttccactgtttcttctttttgaacattcatg 256995  T

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Target: scaffold0005; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 203 - 268
Target Start/End: Original strand, 271973 - 272038
Alignment:
Q  203 cacacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttct 268  Q
    |||||| ||||||||| ||||||||||||||| ||||||||  || |||||||||||||| |||||    
T  271973 cacacactttatcttttcaataaatttaatatgtaacaaacaattattagttactactctttttct 272038  T

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Target: scaffold0097 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 282
Target Start/End: Original strand, 48596 - 48674
Alignment:
Q  203 cacacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttcttcaacaaattccta 282  Q
    |||||| | ||| ||| ||||||||||||||| ||||||||  || |||||||||||||| ||| |||||||||||||||    
T  48596 cacacactatattttttcaataaatttaatatgtaacaaacaatttttagttactactct-ttttttcaacaaattccta 48674  T

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Target: scaffold0841 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0841
Description:

Target: scaffold0841; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 398 - 441
Target Start/End: Original strand, 4472 - 4515
Alignment:
Q  398 gttccaatgagtcttccactctttcttccttttaaacattcatg 441  Q
    |||| ||||| |||||||||||||||||||||| ||||||||||    
T  4472 gttctaatgattcttccactctttcttccttttgaacattcatg 4515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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