View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14578_low_6 (Length: 392)

Name: NF14578_low_6
Description: NF14578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14578_low_6
NF14578_low_6
[»] chr1 (3 HSPs)
chr1 (13-376)||(43617731-43618097)
chr1 (20-225)||(43648477-43648675)
chr1 (222-376)||(43648269-43648421)


Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-125; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 13 - 376
Target Start/End: Complemental strand, 43618097 - 43617731
Alignment:
Q  13 gagcagagaaggttcgtggaagccccaaatagatcagatggagtatggacaatggagattagtccaattatttgggagacttagaaaaactatcggtcaa 112  Q
    |||||||||||| |||| ||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  43618097 gagcagagaaggctcgttgaagccccagatagatcagatggagtatgggcaatggagattagtcaaattatttgggagacttagaaaaactataggtcaa 43617998  T
Q  113 accattaagaaagatttacgttcaaatgatat--atgttttttgacatatctatg-taggacattatagtattgtctaaccatgcagttcaccttgccca 209  Q
    ||||||||||||||||||||| |||||||| |  || |||||||||||||||||  |||||||||||||| |||||||| |||| ||||||||||||| |    
T  43617997 accattaagaaagatttacgtacaaatgatttttattttttttgacatatctataataggacattatagtgttgtctaatcatgtagttcaccttgccga 43617898  T
Q  210 aatggaaaagttatttagatgttagtctcataaaacaattgatttgtgtgcggcaatttattctataatatcaacactggcgcagtcgaagacttcacta 309  Q
    ||||||||||||||||||||| |||| ||||||||||||| ||| ||||  |||| |||||||||||||||||||| ||||||||| ||||| || ||||    
T  43617897 aatggaaaagttatttagatgatagtttcataaaacaatttattcgtgtatggcagtttattctataatatcaacaatggcgcagttgaagattttacta 43617798  T
Q  310 agagaggtcagagtggattttatcacctaaacaagcattgtaagagctatttgtttgttcatctaat 376  Q
    ||||||||||||||||||||||| ||||||| ||| ||| ||||||||| |||||||||||||||||    
T  43617797 agagaggtcagagtggattttattacctaaagaagtattttaagagctacttgtttgttcatctaat 43617731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 20 - 225
Target Start/End: Complemental strand, 43648675 - 43648477
Alignment:
Q  20 gaaggttcgtggaagccccaaatagatcagatggagtatggacaatggagattagtccaattatttgggagacttagaaaaactatcggtcaaaccatta 119  Q
    ||||| |||| ||||||||||||||||||||||||| |||||       ||||||| ||||||||| | ||||||||||||||||| |||||| ||||||    
T  43648675 gaaggctcgttgaagccccaaatagatcagatggagcatgga-------gattagttcaattatttcgaagacttagaaaaactataggtcaagccatta 43648583  T
Q  120 agaaagatttacgttcaaatgatatatgttttttgacatatctatg-taggacattatagtattgtctaaccatgc--agttcaccttgcccaaatggaa 216  Q
    ||||||||||| |||||||||||   | ||||||||||||| || | ||||| ||||||||  | ||||| |||||  ||||||||||||||||||||||    
T  43648582 agaaagatttatgttcaaatgat---ttttttttgacatatatacgataggaaattatagtgctctctaatcatgcagagttcaccttgcccaaatggaa 43648486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 222 - 376
Target Start/End: Complemental strand, 43648421 - 43648269
Alignment:
Q  222 atttagatgttagtctcataaaacaattgatttgtgtgcggcaatttattctataatatcaacactggcgcagtcgaagacttcactaagagaggtcaga 321  Q
    ||||||||| |||| |||||||  |||| |||||| ||  ||| ||||||||||||||||||||| |||||||| ||||| || ||||| ||||||||||    
T  43648421 atttagatgatagtttcataaattaatttatttgtctg--gcagtttattctataatatcaacaccggcgcagttgaagatttgactaacagaggtcaga 43648324  T
Q  322 gtggattttatcacctaaacaagcattgtaagagctatttgtttgttcatctaat 376  Q
    ||||||||||| ||||||||||| ||| ||||||||| |||||||||||||||||    
T  43648323 gtggattttattacctaaacaagtattttaagagctacttgtttgttcatctaat 43648269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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