View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14578_low_9 (Length: 367)
Name: NF14578_low_9
Description: NF14578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14578_low_9 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 15 - 367
Target Start/End: Complemental strand, 35026871 - 35026519
Alignment:
| Q |
15 |
caaaggaccagaaagtagataaggttttccataaaaatttccaagaaattcagcatatggttcatcaagttctttgcaacctttgaaaccaattgcatca |
114 |
Q |
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| T |
35026871 |
caaaggacctgaaagtagataaggttttccataaaaatttccaagaaattcagcatatggttcatcaagttctttgcaacctttgaaaccaattgcatca |
35026772 |
T |
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| Q |
115 |
gctaaacttgtacctatatgcaaacgatcgtataaaaatacaccacttccgaagacaagtttccttgttgaagacagaaattgaagttcatgttgataaa |
214 |
Q |
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| T |
35026771 |
gctaaacttgtacctatatgcaaacgatcgtataaaaatacaccacttccgaagacaagtttccttgttgaagatagaaattgaagttcatgttgataaa |
35026672 |
T |
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| Q |
215 |
gcttgatagaaccatcagggtaccctgaaggtggtttcttgagatcatctacagttaatccttttccttggctatgtcttggtccattccaaaaataaga |
314 |
Q |
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| T |
35026671 |
gcttgatagaaccatcagggtaccctgaaggtggtttcttgagatcatctacagttaatccttttccttggctatgtcttggtccattccaaaaataaga |
35026572 |
T |
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| Q |
315 |
tattgaaaatggacttgttatccaatattgaagactttttatgccaagttttt |
367 |
Q |
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| T |
35026571 |
tattgaaaatggacttgttatccaatattgaagactttttatgccaagttttt |
35026519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 18 - 261
Target Start/End: Complemental strand, 35033877 - 35033634
Alignment:
| Q |
18 |
aggaccagaaagtagataaggttttccataaaaatttccaagaaattcagcatatggttcatcaagttctttgcaacctttgaaaccaattgcatcagct |
117 |
Q |
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| T |
35033877 |
aggacctgaaagcagaacaggttttccaaaaacagtttcaatataatcagcatatggtccatcaacttcattgcaacctttgaaaccaactgcatctgca |
35033778 |
T |
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| Q |
118 |
aaacttgtacctatatgcaaacgatcgtataaaaatacaccacttccgaagacaagtttccttgttgaagacagaaattgaagttcatgttgataaagct |
217 |
Q |
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| T |
35033777 |
gaggttgtaccaatgtgcaaacgatcaaataagaaaacaccacttccaaatgcaattttccttgttgaagctaggaatcgaagttcgtgtttataaaact |
35033678 |
T |
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| Q |
218 |
tgatagaaccatcagggtaccctgaaggtggtttcttgagatca |
261 |
Q |
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| T |
35033677 |
tgatgcaagaatcagggaaccctgaaggtggtttcatgatatca |
35033634 |
T |
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