View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14579_high_11 (Length: 381)
Name: NF14579_high_11
Description: NF14579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14579_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 188 - 370
Target Start/End: Complemental strand, 6984702 - 6984520
Alignment:
| Q |
188 |
cttgttacaaaccagggaaaacccgaggaagtgtattcataagcacggaagagacaatccattgatacttggaggtgaggtaatttgtttctgcctcaaa |
287 |
Q |
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| T |
6984702 |
cttgttacaaaccagggaaaacccgaggaagtgtagtcataagcacggaagagacaatccattgatacttggaggtgagataatttgtttctgcctcaaa |
6984603 |
T |
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| Q |
288 |
attactatgccgtccctcttctgacatttgatcattgaacgattgtaaagcatggaccaaaattaacaaacacttctgatgat |
370 |
Q |
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| T |
6984602 |
attattatgcattccctcttctgacatttgatcattgaaagattgtaaagcatggaccaaaattaacaaacacttctcatgat |
6984520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 6985105 - 6984949
Alignment:
| Q |
1 |
gtggattagtattgacagtgttgaaaatatagttagttagagttactggttggttagtatataagctaagttaagcatataagtcacagcgttacctcat |
100 |
Q |
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| T |
6985105 |
gtggattagtattgacagtgttgaaaatatagttagttagagttactggttggttagtatataagctaacttaagtatataagtcacagcgttacctcat |
6985006 |
T |
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| Q |
101 |
tggtgccatcttttcattttgtatctcatttctactactatcaatacaacaagcttt |
157 |
Q |
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| T |
6985005 |
tggtgccatcttttcattttgtatctcatttctactactatcaatacaacaagcttt |
6984949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 5e-38; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 192 - 364
Target Start/End: Original strand, 31900745 - 31900911
Alignment:
| Q |
192 |
ttacaaaccagggaaaacccgaggaagtgtattcataagcacggaagagacaatccattgatacttggaggtgaggtaatttgtttctgcctcaaaatta |
291 |
Q |
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| T |
31900745 |
ttacaaaccagggaaaacgcgaggaagtgtagccataagcacggaagagacagtccattggtacttagaggtaaggtaattcctttctgcttcaaaat-- |
31900842 |
T |
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| Q |
292 |
ctatgccgtccctcttctgacatttgatcattgaacgattgtaaagcatggaccaaaattaacaaacacttct |
364 |
Q |
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| T |
31900843 |
-tatgcctt---tcctctgacgtttgatccttgaaagattgtaaagcatggaccaaaattaacagacacttct |
31900911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 192 - 364
Target Start/End: Original strand, 31964541 - 31964707
Alignment:
| Q |
192 |
ttacaaaccagggaaaacccgaggaagtgtattcataagcacggaagagacaatccattgatacttggaggtgaggtaatttgtttctgcctcaaaatta |
291 |
Q |
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| T |
31964541 |
ttacaaaccagggaaaacgcgaggaagtgtggccataagcacagaagagacagtccattgatacttagaggtaaggtaattcctttctgcttcaaaat-- |
31964638 |
T |
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| Q |
292 |
ctatgccgtccctcttctgacatttgatcattgaacgattgtaaagcatggaccaaaattaacaaacacttct |
364 |
Q |
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| T |
31964639 |
-tatgcctt---tcctctgacgtttgatccttgaaagattgtaaagcatggaccaaaattaacagacacttct |
31964707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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