View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14579_high_18 (Length: 330)
Name: NF14579_high_18
Description: NF14579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14579_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 15 - 315
Target Start/End: Original strand, 51121698 - 51121998
Alignment:
| Q |
15 |
atattcttctacatatgatcaaatctaccaaacaatggaatggaaatatacatattctcctacataaaaaatttcacttgcatcaatcattagaaatttg |
114 |
Q |
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| T |
51121698 |
atattcttctacatatgatcaaatctaccaaacaatggaatggaaatatacatattctcctacataaaaaatttcacttgcatcaatcattagaaatttg |
51121797 |
T |
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| Q |
115 |
aaaagnnnnnnnggtcacttgtaactaaacgtatgtggttataagtgaaataaactttgagtggccaagaaggtcnnnnnnnnnnnnnnnnnnnnnnntc |
214 |
Q |
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| T |
51121798 |
aaaagaaaaaaaggtcacttgtaactaaacatatgtggttataagtgaaataaacttttagtggccaagaaggtcaaaaaacaataaaaatagaaaaatc |
51121897 |
T |
|
| Q |
215 |
atttttcatgattagaataggaaaaatttagagaatgttttctcctttgtatagtgattgtgttttaaatgtcttgccttttcactttgcaagtaaatct |
314 |
Q |
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| T |
51121898 |
atttttcatgattagaataggaaaaatttagagaatgttttctaatttgtatagtgattgtgttttaaatgtcttgccttttcactttgcaggtaaatct |
51121997 |
T |
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| Q |
315 |
t |
315 |
Q |
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| T |
51121998 |
t |
51121998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 242 - 305
Target Start/End: Original strand, 45245966 - 45246029
Alignment:
| Q |
242 |
ttagagaatgttttctcctttgtatagtgattgtgttttaaatgtcttgccttttcactttgca |
305 |
Q |
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| T |
45245966 |
ttagagaatgttttctcttttgtatattgattgtgttttaaatgtcttgccttttcactctgca |
45246029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 248 - 299
Target Start/End: Original strand, 48885966 - 48886017
Alignment:
| Q |
248 |
aatgttttctcctttgtatagtgattgtgttttaaatgtcttgccttttcac |
299 |
Q |
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| T |
48885966 |
aatgttttctcctttgtatagtgattgtcttttaaatgtctttccttttcac |
48886017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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